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revision 88 by aloraine, Tue Jan 15 22:11:30 2019 UTC revision 181 by aloraine, Wed Apr 3 19:37:19 2024 UTC
# Line 42  AddDescription "Annotation or junction f Line 42  AddDescription "Annotation or junction f
42  AddDescription "Annotation or junction file" *.bed  AddDescription "Annotation or junction file" *.bed
43  AddDescription "EST alignments" EST  AddDescription "EST alignments" EST
44  AddDescription "mRNA alignments" mRNA  AddDescription "mRNA alignments" mRNA
45    AddDescription "Anguilla rostrata" (Oct 2016) American eel (LTYT01/Dryad)" A_rostrata_Oct_2016
46    AddDescription "Anopheles gambiae (Oct 2006) mosquito (AgamP3/anoGam3)" A_gambiae_Oct_2006
47  AddDescription "Anopheles gambiae (Feb 2003) mosquito (anoGam1/IAGP v.MOZ2)" A_gambiae_Feb_2003  AddDescription "Anopheles gambiae (Feb 2003) mosquito (anoGam1/IAGP v.MOZ2)" A_gambiae_Feb_2003
48  AddDescription "Ailuropoda melanoleuca (Dec 2009) giant panda (ailMel1/BGI-Shenzhen AilMel 1.0)" A_melanoleuca_Dec_2009  AddDescription "Ailuropoda melanoleuca (Dec 2009) giant panda (ailMel1/BGI-Shenzhen AilMel 1.0)" A_melanoleuca_Dec_2009
49  AddDescription "Apis mellifera (honeybee) Jan 2005 (apiMel2/Baylor College of Medicine HGSC v.Amel_2.0 )" A_mellifera_Jan_2005  AddDescription "Apis mellifera (honeybee) Jan 2005 (apiMel2/Baylor College of Medicine HGSC v.Amel_2.0 )" A_mellifera_Jan_2005
# Line 57  AddDescription "Fragaria vesca (woodland Line 59  AddDescription "Fragaria vesca (woodland
59  AddDescription "Cavia porcellus (Feb 2008) guinea pig (cavPor3)" C_porcellus_Feb_2008  AddDescription "Cavia porcellus (Feb 2008) guinea pig (cavPor3)" C_porcellus_Feb_2008
60  AddDescription "C. elegans Feb 2013 (WBcel235/ce11)" C_elegans_Feb_2013  AddDescription "C. elegans Feb 2013 (WBcel235/ce11)" C_elegans_Feb_2013
61  AddDescription "C. elegans Oct 2010 (WS220/ce10)" C_elegans_Oct_2010  AddDescription "C. elegans Oct 2010 (WS220/ce10)" C_elegans_Oct_2010
62  AddDescription "Chlorocebus sabeus (Mar 2014) African green monkey (Chlorocebus_sabeus 1.1/chlSab2)" C_sabeus_Mar_2014  AddDescription "Chlorocebus sabaeus (Mar 2014) African green monkey (Chlorocebus_sabaeus 1.1/chlSab2)" C_sabaeus_Mar_2014
63  AddDescription "Danio rerio (May 2017) zebrafish (GRCz11/danRer11)" D_rerio_May_2017  AddDescription "Danio rerio (May 2017) zebrafish (GRCz11/danRer11)" D_rerio_May_2017
64  AddDescription "Danio rerio (Jul 2010) zebrafish (danRer7/Zv9)" D_rerio_Jul_2010  AddDescription "Danio rerio (Jul 2010) zebrafish (danRer7/Zv9)" D_rerio_Jul_2010
65    AddDescription "Daphnia magna Xinb3 v2.4 (Apr 2010) water flea" D_magna_Apr_2010
66    AddDescription "Daphnia magna SK v1.0 (Jan 2019) water flea" D_magna_Jan_2019
67    AddDescription "Daphnia pulex TCO v1.0 (Feb 2011) water flea" D_pulex_Feb_2011
68    AddDescription "Daphnia pulex PA42 v3.0 (Sep 2016) water flea" D_pulex_Sep_2016
69  AddDescription "Drosophila melanogaster (Apr 2006) fruit fly (dm3/BDGP R5)" D_melanogaster_Apr_2006  AddDescription "Drosophila melanogaster (Apr 2006) fruit fly (dm3/BDGP R5)" D_melanogaster_Apr_2006
70    AddDescription "Drosophila melanogaster (Aug 2014) fruit fly (BDGP Release 6 + ISO1 MT/dm6)" D_melanogaster_Aug_2014
71  AddDescription "Drosophila melanogaster (July 2014) fruit fly (dmel_r6.03_FB2014_06)" D_melanogaster_Jul_2014  AddDescription "Drosophila melanogaster (July 2014) fruit fly (dmel_r6.03_FB2014_06)" D_melanogaster_Jul_2014
72  AddDescription "Equus caballus (Sep 2007) horse (equCab2)" E_caballus_Sep_2007  AddDescription "Equus caballus (Sep 2007) horse (equCab2)" E_caballus_Sep_2007
73  AddDescription "Felis catus (Dec 2008) cat (NHGRI/GTB V17e/felCat4)" F_catus_Dec_2008  AddDescription "Felis catus (Dec 2008) cat (NHGRI/GTB V17e/felCat4)" F_catus_Dec_2008
74    AddDescription "Ficedula albicollis (Jun 2013) collared flycatcher (FicAlb1.5)" F_albicollis_Jun_2013
75  AddDescription "Gallus gallus (Nov 2011) chicken (galGal4/ICGC Gallus-gallus-4.0)" G_gallus_Nov_2011  AddDescription "Gallus gallus (Nov 2011) chicken (galGal4/ICGC Gallus-gallus-4.0)" G_gallus_Nov_2011
76  AddDescription "Loxodonta africana (Jul 2009) elephant (loxAfr3)" L_africana_Jul_2009  AddDescription "Loxodonta africana (Jul 2009) elephant (loxAfr3)" L_africana_Jul_2009
77  AddDescription "Papaya" C_papaya_Aug_2010  AddDescription "Papaya" C_papaya_Aug_2010
78  AddDescription "Brachypodium distachyon (a model grass) JGI v1.0 8x assembly" B_distachyon_Aug_2010  AddDescription "Brachypodium distachyon (a model grass) JGI v1.0 8x assembly" B_distachyon_Aug_201
79    AddDescription "Hypsibius exemplaris strain Z151 (Apr 2017) water bear (nHd_3.1 assembly)" H_exemplaris_Z151_Apr_2017
80  AddDescription "Homo sapiens hg38 (Genome Reference Consortium GRCh38)" H_sapiens_Dec_2013  AddDescription "Homo sapiens hg38 (Genome Reference Consortium GRCh38)" H_sapiens_Dec_2013
81  AddDescription "Homo sapiens hg19 (Genome Reference Consortium GRCh37)" H_sapiens_Feb_2009  AddDescription "Homo sapiens hg19 (Genome Reference Consortium GRCh37)" H_sapiens_Feb_2009
82  AddDescription "Homo sapiens hg18 (Genome Reference Consortium GRCh36)" H_sapiens_Mar_2006  AddDescription "Homo sapiens hg18 (Genome Reference Consortium GRCh36)" H_sapiens_Mar_2006
# Line 75  AddDescription "Homo sapiens hg17 (Genom Line 84  AddDescription "Homo sapiens hg17 (Genom
84  AddDescription "Nematostella vectensis, starlet sea anemone" N_vectensis_Jun_2007  AddDescription "Nematostella vectensis, starlet sea anemone" N_vectensis_Jun_2007
85  AddDescription "Chlamy (an algal genome)" C_reinhardtii_Nov_2010  AddDescription "Chlamy (an algal genome)" C_reinhardtii_Nov_2010
86  AddDescription "Camelina, false flax, an oilseed crop" C_sativa_DH55_Apr_2014  AddDescription "Camelina, false flax, an oilseed crop" C_sativa_DH55_Apr_2014
87    AddDescription "Cannabis sativa CBDRx Dec 2018" C_sativa_CBDRx_Dec_2018
88  AddDescription "Rice, japonic variety" O_sativa_japonica_Jun_2009  AddDescription "Rice, japonic variety" O_sativa_japonica_Jun_2009
89  AddDescription "Rice, japonic variety Os-Nipponbare-Reference-IRGSP-1.0 assembly" O_sativa_japonica_Oct_2011  AddDescription "Rice, japonic variety Os-Nipponbare-Reference-IRGSP-1.0 assembly" O_sativa_japonica_Oct_2011
90  AddDescription "Soybean Glyma1" G_max_Aug_2010  AddDescription "Soybean Glyma1" G_max_Aug_2010
# Line 85  AddDescription "Fission yeast" S_pombe_A Line 95  AddDescription "Fission yeast" S_pombe_A
95  AddDescription "Volvox" V_carteri_Jul_2010  AddDescription "Volvox" V_carteri_Jul_2010
96  AddDescription "Wine grape 12x assembly" V_vinifera_Mar_2010  AddDescription "Wine grape 12x assembly" V_vinifera_Mar_2010
97  AddDescription "Physcomitrella patens (moss)" P_patens_Jan_2008  AddDescription "Physcomitrella patens (moss)" P_patens_Jan_2008
98    AddDescription "Physcomitrella patens (moss) v3.3" P_patens_Jan_2018
99  AddDescription "Black cottonwood (poplar)" P_trichocarpa_Aug_2012  AddDescription "Black cottonwood (poplar)" P_trichocarpa_Aug_2012
100  AddDescription "Black cottonwood (poplar)" P_trichocarpa_Jan_2010  AddDescription "Black cottonwood (poplar)" P_trichocarpa_Jan_2010
101  AddDescription "Sorghum bicolor" S_bicolor_Jan_2009  AddDescription "Sorghum bicolor" S_bicolor_Jan_2009
102  AddDescription "Sorghum bicolor" S_bicolor_Jun_2013  AddDescription "Sorghum bicolor" S_bicolor_Jun_2013
103  AddDescription "Candida albicans" C_albicans_WO-1_Dec_2013  AddDescription "Candida albicans WO-1 (Dec 2013)" C_albicans_WO-1_Dec_2013
104  AddDescription "Candida albicans" C_albicans  AddDescription "Candida albicans" C_albicans
105  AddDescription "Zea mays B73 RefGen_v2 assembly" Z_mays_B73_Mar_2010  AddDescription "Zea mays B73 RefGen_v2 assembly" Z_mays_B73_Mar_2010
106  AddDescription "Bos taurus (Jun 2014) cow (UMD_3.1.1/bosTau8)" B_taurus_Jun_2014  AddDescription "Bos taurus (Jun 2014) cow (UMD_3.1.1/bosTau8)" B_taurus_Jun_2014
# Line 105  AddDescription "Chloroplast Genome (Fast Line 116  AddDescription "Chloroplast Genome (Fast
116  AddDescription "Peach v1 genome assembly" P_persica_Apr_2010  AddDescription "Peach v1 genome assembly" P_persica_Apr_2010
117  AddDescription "Thermococcus kodakaraensis" T_kodakaraensis_KOD1_May_2004  AddDescription "Thermococcus kodakaraensis" T_kodakaraensis_KOD1_May_2004
118  AddDescription "Xenopus tropicalis JGI 4.2/xenTro3" X_tropicalis_Nov_2009  AddDescription "Xenopus tropicalis JGI 4.2/xenTro3" X_tropicalis_Nov_2009
119    AddDescription "Xenopus tropicalis JGI 9.1/xenTro9" X_tropicalis_Jul_2016
120    AddDescription "Mus musculus (Jun 2020) mouse (GRCm39/mm39)" M_musculus_Jun_2020
121  AddDescription "Mus musculus (Dec 2011) mouse (GRCm38/mm10)" M_musculus_Dec_2011  AddDescription "Mus musculus (Dec 2011) mouse (GRCm38/mm10)" M_musculus_Dec_2011
122  AddDescription "Mus musculus (Jul 2007) mouse (NCBI37/mm9)" M_musculus_Jul_2007  AddDescription "Mus musculus (Jul 2007) mouse (NCBI37/mm9)" M_musculus_Jul_2007
123  AddDescription "Mus musculus (Feb 2006) mouse (NCBI36/mm8)" M_musculus_Feb_2006  AddDescription "Mus musculus (Feb 2006) mouse (NCBI36/mm8)" M_musculus_Feb_2006
# Line 113  AddDescription "Malus domestica (Jun 201 Line 126  AddDescription "Malus domestica (Jun 201
126  AddDescription "Musa acuminata DH Pahang (Jan 2016) banana (v2)" M_acuminata_DH_Pahang_Jan_2016  AddDescription "Musa acuminata DH Pahang (Jan 2016) banana (v2)" M_acuminata_DH_Pahang_Jan_2016
127  AddDescription "Pan troglodytes (Oct 2010) chimpanzee (CGSC 2.1.3/panTro3)" P_troglodytes_Oct_2010  AddDescription "Pan troglodytes (Oct 2010) chimpanzee (CGSC 2.1.3/panTro3)" P_troglodytes_Oct_2010
128  AddDescription "Ovis aries (Feb 2010) sheep (ISGC Ovis_aries_1/oviAri1)" O_aries_Feb_2010  AddDescription "Ovis aries (Feb 2010) sheep (ISGC Ovis_aries_1/oviAri1)" O_aries_Feb_2010
129    AddDescription "Rattus norvegicus (Nov 2020) rat (mRatBN7.2/rn7)" R_norvegicus_Nov_2020
130  AddDescription "Rattus norvegicus (Jul 2014) rat (RGSC 6.0/rn6)" R_norvegicus_Jul_2014    AddDescription "Rattus norvegicus (Jul 2014) rat (RGSC 6.0/rn6)" R_norvegicus_Jul_2014  
131  AddDescription "Rattus norvegicus (Mar 2012) rat (RGSC 5.0/rn5)" R_norvegicus_Mar_2012    AddDescription "Rattus norvegicus (Mar 2012) rat (RGSC 5.0/rn5)" R_norvegicus_Mar_2012
132    AddDescription "Solanum lycopersicum (Sep 2019) tomato (SL4.0)" S_lycopersicum_Sep_2019
133  AddDescription "Solanum lycopersicum (Feb 2017) tomato (SL3.0)" S_lycopersicum_Feb_2017  AddDescription "Solanum lycopersicum (Feb 2017) tomato (SL3.0)" S_lycopersicum_Feb_2017
134  AddDescription "Solanum lycopersicum (Feb 2014) tomato (SL2.50)" S_lycopersicum_Feb_2014  AddDescription "Solanum lycopersicum (Feb 2014) tomato (SL2.50)" S_lycopersicum_Feb_2014
135  AddDescription "Solanum lycopersicum (May 2012) tomato (SL2.40)" S_lycopersicum_May_2012  AddDescription "Solanum lycopersicum (May 2012) tomato (SL2.40)" S_lycopersicum_May_2012
136    AddDescription "Solanum lycopersicum (Jun 2022) tomato (SL5.0)" S_lycopersicum_Jun_2022
137  AddDescription "S. pombe (May 2012) fission yeast" S_pombe_May_2012  AddDescription "S. pombe (May 2012) fission yeast" S_pombe_May_2012
138  AddDescription "Takifugu rubripes (Oct 2011) Fugu (FUGU5/fr3)" T_rubripes_Oct_2011  AddDescription "Takifugu rubripes (Oct 2011) Fugu (FUGU5/fr3)" T_rubripes_Oct_2011
139  AddDescription "Thellungiella parvula (salt cress) v2, May 2012" T_parvula_May_2012  AddDescription "Thellungiella parvula (salt cress) v2, May 2012" T_parvula_May_2012
# Line 128  AddDescription "Lotmaria passim, strain Line 144  AddDescription "Lotmaria passim, strain
144  AddDescription "Yarrowia lipolytica CLIB122 (Jul 2004) Assembly GCA_000002525.2" Y_lipolytica_CLIB122_Jul_2004  AddDescription "Yarrowia lipolytica CLIB122 (Jul 2004) Assembly GCA_000002525.2" Y_lipolytica_CLIB122_Jul_2004
145  AddDescription "Yarrowia lipolytica PO1f (May 2014) Assembly GCA_000590845.2" Y_lipolytica_PO1f_May_2014  AddDescription "Yarrowia lipolytica PO1f (May 2014) Assembly GCA_000590845.2" Y_lipolytica_PO1f_May_2014
146  AddDescription "Yarrowia lipolytica WSH-Z06 (Mar 2014) Assembly GCA_000613155.1" Y_lipolytica_WSH-Z06_Mar_2014  AddDescription "Yarrowia lipolytica WSH-Z06 (Mar 2014) Assembly GCA_000613155.1" Y_lipolytica_WSH-Z06_Mar_2014
147    AddDescription "Triticum aestivum (IWGSC v1)" T_aestivum_Aug_2018
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