 Parent Directory
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styling/
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177 |
14 months |
aloraine |
IGBF-3395 IGBF-3173 Get code from lorainelab CDN address
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Z_mays_B73_Mar_2010/
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64 |
6 years |
aloraine |
Add Zea Mays B73 RefGenv2 genome assembly and annotations, from Maize genome dat…
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Y_lipolytica_WSH-Z06_Mar_2014/
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63 |
6 years |
aloraine |
Add Y_lipolytica genomes, collected from Genbank
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Y_lipolytica_PO1f_May_2014/
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63 |
6 years |
aloraine |
Add Y_lipolytica genomes, collected from Genbank
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Y_lipolytica_CLIB122_Jul_2004/
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63 |
6 years |
aloraine |
Add Y_lipolytica genomes, collected from Genbank
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X_tropicalis_Nov_2009/
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80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
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X_tropicalis_Jul_2016/
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116 |
4 years |
aloraine |
Add Xenopus tropicalis Jul 2016 assembly with RefSeq All (ncbiRefSeq) gene model…
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V_vinifera_Mar_2010/
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62 |
6 years |
aloraine |
Add 12X March 2010 wine grape draft genome Vitis vinifera genome assembly
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V_carteri_Jul_2010/
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61 |
6 years |
aloraine |
Add Volvox carteri f. nagariensis, Eve Jul 2010 assembly, collected from Phytozo…
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T_rubripes_Oct_2011/
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80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
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T_parvula_May_2012/
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60 |
6 years |
aloraine |
Add Thellungiella parvula (salt cress) v2, May 2012 genome assembly
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T_kodakaraensis_KOD1_May_2004/
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59 |
6 years |
aloraine |
Add Thermococcus kodakaraensis May 2004 genome, collected from Genbank accession…
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T_castaneum_Mar_2008/
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58 |
6 years |
aloraine |
Add Tribolium castaneum (March 2008) red flour beetle
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T_aestivum_Aug_2018/
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125 |
4 years |
aloraine |
IGBF-2548 Use uncompressed file to distribute gene models
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S_tuberosum_DM_Jul_2011/
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74 |
6 years |
aloraine |
Add gene model annotations converted from http://solanaceae.plantbiology.msu.edu…
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S_pombe_May_2012/
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57 |
6 years |
aloraine |
Add S. pombe (May 2012) fission yeast genome assembly and annotations
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S_lycopersicum_Sep_2019/
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121 |
4 years |
aloraine |
List un-assembled contig last
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S_lycopersicum_May_2012/
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56 |
6 years |
aloraine |
Add Solanum lycopersicum (tomato) May 2012/SL2.40 genome assembly
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S_lycopersicum_Jun_2022/
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169 |
21 months |
aloraine |
IGBF-3145 Include SL4 locus name in transferred-to-SL5 description
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S_lycopersicum_Feb_2017/
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120 |
4 years |
aloraine |
Add multi-exon Cufflinks gene models from article titled Expanding Alternative S…
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S_lycopersicum_Feb_2014/
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55 |
6 years |
aloraine |
Add Solanum lycopersicum (tomato) May 2012/SL2.40 and Feb 2014/SL2.50 genome ass…
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S_cerevisiae_Jun_2008/
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80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
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S_cerevisiae_Apr_2011/
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117 |
4 years |
aloraine |
Update budding yeast gene model annotations and annots.xml configuration
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S_bicolor_Jun_2013/
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53 |
6 years |
aloraine |
Add Sorghum bicolor v1.0 and v2.0 (June 2013) genome assemblies, collected from …
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S_bicolor_Jan_2009/
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53 |
6 years |
aloraine |
Add Sorghum bicolor v1.0 and v2.0 (June 2013) genome assemblies, collected from …
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R_norvegicus_Nov_2020/
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176 |
16 months |
nfreese |
IGBF-3362: Add Rattus norvegicus Nov 2020 genome;Jun 29, 2023
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R_norvegicus_Mar_2012/
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86 |
5 years |
aloraine |
Add HEADER.md for rat & cow; Fix error
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R_norvegicus_Jul_2014/
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82 |
6 years |
aloraine |
Add rn6 (rat)
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R_communis_May_2008/
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52 |
6 years |
aloraine |
Add Ricinis communis TIGR/JCVI v0.1 assembly, castor bean
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P_troglodytes_Oct_2010/
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80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
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P_trichocarpa_Jan_2010/
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46 |
6 years |
aloraine |
Add Populus trichocarpa v2 and v3 genomes, collected from Phytozome
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P_trichocarpa_Aug_2012/
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46 |
6 years |
aloraine |
Add Populus trichocarpa v2 and v3 genomes, collected from Phytozome
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P_persica_Apr_2010/
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45 |
6 years |
aloraine |
Add Prunus persica v1 genome assembly, collected from Phytozome v7
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P_patens_Jan_2018/
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149 |
3 years |
aloraine |
Add Physcomitrella Jan 2018 v3.3 genome and annotations from Phytozome 318
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P_patens_Jan_2008/
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44 |
6 years |
aloraine |
Add Physcomitrella patens Jan 2008 genome from CossMoss
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O_sativa_japonica_Oct_2011/
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43 |
6 years |
aloraine |
Add Oryza sativa japonica June 2009 and Oryza sativa japonica variety Os-Nipponb…
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O_sativa_japonica_Jun_2009/
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43 |
6 years |
aloraine |
Add Oryza sativa japonica June 2009 and Oryza sativa japonica variety Os-Nipponb…
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O_aries_Feb_2010/
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80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
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N_vectensis_Jun_2007/
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80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
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M_truncatula_Mar_2009/
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40 |
6 years |
aloraine |
Add Medicago truncatula Mt3.0 release from Phytozome v7
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M_musculus_Jun_2020/
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173 |
16 months |
nfreese |
IGBF-3330: Add Mus musculus Jun 2020 genome;Jun 29, 2023
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M_musculus_Jul_2007/
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80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
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M_musculus_Feb_2006/
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80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
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M_musculus_Dec_2011/
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160 |
3 years |
nfreese |
IGBF-2696;Add mm10 ENCODE blacklist v2;Sep 22, 2021
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M_musculus_Aug_2005/
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80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
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M_domestica_Borkh_Jun_2017/
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38 |
6 years |
aloraine |
Add Malus domestica Borkh (GDDH13 Version 1.1) apple genome assembly and annotat…
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M_acuminata_DH_Pahang_Jan_2016/
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37 |
6 years |
aloraine |
Add Musa acuminata DH Pahang (Jan 2016) banana (v2) genome assembly and annotati…
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L_passim_Apr_2014/
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148 |
3 years |
nfreese |
Fix off by one in protein match;Feb 2, 2021
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L_africana_Jul_2009/
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80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
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H_sapiens_May_2004/
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80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
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H_sapiens_Mar_2006/
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80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
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H_sapiens_Feb_2009/
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159 |
3 years |
nfreese |
IGBF-2696;Add hg19 ENCODE blacklist v2;Sep 22, 2021
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H_sapiens_Dec_2013/
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170 |
20 months |
aloraine |
IGBF-3256 Show CHESS version 3.0 gene models for hg38
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G_max_Jan_2014/
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35 |
6 years |
aloraine |
Add Glycine max (soybean) Gmax_275_v2.0 genome assembly and annotations, collect…
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G_max_Aug_2010/
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34 |
6 years |
aloraine |
Add Glycine max Glyma1 soybean genome assembly and annotations, collected from P…
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G_gallus_Nov_2011/
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80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
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F_vesca_Sep_2011/
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32 |
6 years |
aloraine |
Add Fragaria vesca (woodland strawberry) v1
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F_catus_Sep_2011/
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80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
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F_albicollis_Jun_2013/
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154 |
3 years |
nfreese |
IGBF-2803:Add Ficedula albicollis genome;Mar 29, 2021
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E_coli_K12-MG1655_Jan_2012/
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80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
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E_caballus_Sep_2007/
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80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
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D_rerio_May_2017/
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87 |
5 years |
aloraine |
Add zebrafish May 2017 genome and annotations
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D_rerio_Jul_2010/
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88 |
5 years |
aloraine |
Add description for new genome versions ce11, chlSab2, C. albicans
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D_pulex_Sep_2016/
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108 |
5 years |
aloraine |
IGBF-1915 - Add water flea (Daphnia) genomes
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D_pulex_Feb_2011/
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108 |
5 years |
aloraine |
IGBF-1915 - Add water flea (Daphnia) genomes
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D_melanogaster_Jul_2014/
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111 |
5 years |
aloraine |
IGBF-1492 - Add note indicating FlyBase models came from FlyBase original GFF
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D_melanogaster_Aug_2014/
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163 |
2 years |
nfreese |
IGBF-2952: Add Drosophila melanogaster Aug 2014 genome;Nov 22, 2021
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D_melanogaster_Apr_2006/
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157 |
3 years |
nfreese |
IGBF-2696;Add dm3 ENCODE blacklist v2;Sep 22, 2021
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D_magna_Jan_2019/
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108 |
5 years |
aloraine |
IGBF-1915 - Add water flea (Daphnia) genomes
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D_magna_Apr_2010/
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108 |
5 years |
aloraine |
IGBF-1915 - Add water flea (Daphnia) genomes
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D_discoideum_Ax4_May_2009/
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23 |
6 years |
aloraine |
Add Dictyostelim discoideum (slime mold) May 2009 assembly and annotations, from…
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C_sativa_DH55_Apr_2014/
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22 |
6 years |
aloraine |
Add Camelina sativa (false flax) April 2014 assembly
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C_sativa_CBDRx_Dec_2018/
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122 |
4 years |
aloraine |
IGBF-2400 Add C_sativa_CBDRx_Dec_2018 genome
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C_sabaeus_Mar_2014/
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94 |
5 years |
aloraine |
Add green monkey sequence
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C_reinhardtii_Nov_2010/
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21 |
6 years |
aloraine |
Add Chlamydomonas reinhardtii JGI v4 assembly
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C_porcellus_Feb_2008/
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80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
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C_papaya_Aug_2010/
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19 |
6 years |
aloraine |
Add Carica papaya genome assembly, from Phytozome
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C_elegans_Oct_2010/
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156 |
3 years |
nfreese |
IGBF-2696;Add ce10 ENCODE blacklist v2;Sep 22, 2021
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C_elegans_May_2008/
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80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
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C_elegans_Feb_2013/
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155 |
3 years |
nfreese |
IGBF-2696;Add ce11 ENCODE blacklist v2;Sep 22, 2021
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C_albicans_WO-1_Jul_2010/
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106 |
5 years |
aloraine |
Add American eel as per community request - see IGBF-1546
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C_albicans_WO-1_Dec_2013/
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107 |
5 years |
aloraine |
IGBF-1498 Add C. albicans Dec 2013 assembly and annotations
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C_albicans_SC5314_Nov_2008/
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90 |
5 years |
aloraine |
Add Candida albicans SC5314 Assembly 22 Jun_2014
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C_albicans_SC5314_Jun_2014/
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90 |
5 years |
aloraine |
Add Candida albicans SC5314 Assembly 22 Jun_2014
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B_taurus_Oct_2011/
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80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
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B_taurus_Jun_2014/
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86 |
5 years |
aloraine |
Add HEADER.md for rat & cow; Fix error
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B_distachyon_Aug_2010/
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14 |
6 years |
aloraine |
Add Brachypodium distachyon JGI v1.0 8x assembly
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A_thaliana_Jun_2009/
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76 |
6 years |
aloraine |
Load Araport gene models instead of TAIR10 mRNA
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A_thaliana_Apr_2008/
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103 |
5 years |
aloraine |
Use tabix-indexed files for TAIR8 annotations
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A_rostrata_Oct_2016/
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106 |
5 years |
aloraine |
Add American eel as per community request - see IGBF-1546
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A_mellifera_Jan_2005/
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80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
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A_melanoleuca_Dec_2009/
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80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
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A_lyrata_Apr_2011/
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5 |
6 years |
aloraine |
Add Arabidopsis lyrata genome assembly and annotations, from Phytozome
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A_gambiae_Oct_2006/
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105 |
5 years |
aloraine |
Fix close tag
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A_gambiae_Feb_2003/
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80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
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synonyms.txt
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112
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5 years |
aloraine |
Include grcH38P12 (patch12) as synonym for H_sapiens_Dec_2013
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species.txt
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122
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4 years |
aloraine |
IGBF-2400 Add C_sativa_CBDRx_Dec_2018 genome
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favicon.ico
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2
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6 years |
aloraine |
Show this in place of a folder icon in IGB Available Data Sets browser
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contents.txt
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175
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16 months |
nfreese |
IGBF-3362: Add Rattus norvegicus Nov 2020 genome;Jun 29, 2023
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HEADER.md
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180
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13 months |
aloraine |
IGBF-3395 Improve formatting
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.htaccess
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174
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16 months |
nfreese |
IGBF-3362: Add Rattus norvegicus Nov 2020 genome;Jun 29, 2023
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