 Parent Directory
|
|
|
|
|
R_varieornatus_YOKOZUNA-1_Nov_2016/
|
194 |
4 months |
nfreese |
IGBF-3682: Add Ramazzottius varieornatus Nov 2016 genome; Jul 8, 2024
|
|
D_melanogaster_Aug_2014/
|
193 |
5 months |
nfreese |
IGBF-3666: Remove return carriages in D melanogaster Aug 2014 refGene annotation…
|
|
S_lycopersicum_Sep_2019/
|
191 |
5 months |
aloraine |
IGBF-3172 Include F3H and enzyme name in description for Solyc02g083860 in SL4
|
|
S_lycopersicum_Jun_2022/
|
190 |
5 months |
aloraine |
IGBF-3172 Include F3H and enzyme name in description for PRAM_26184 in SL5
|
|
H_exemplaris_Z151_Apr_2017/
|
186 |
6 months |
pkulzer |
IGBF-3682: Fix typo in annots.xml; Apr 24, 2024
|
|
S_pombe_May_2012/
|
183 |
7 months |
pkulzer |
IGBF-1122: Update S. pombe URL attribute; Apr 4, 2024
|
|
styling/
|
177 |
14 months |
aloraine |
IGBF-3395 IGBF-3173 Get code from lorainelab CDN address
|
|
R_norvegicus_Nov_2020/
|
176 |
16 months |
nfreese |
IGBF-3362: Add Rattus norvegicus Nov 2020 genome;Jun 29, 2023
|
|
M_musculus_Jun_2020/
|
173 |
16 months |
nfreese |
IGBF-3330: Add Mus musculus Jun 2020 genome;Jun 29, 2023
|
|
H_sapiens_Dec_2013/
|
170 |
20 months |
aloraine |
IGBF-3256 Show CHESS version 3.0 gene models for hg38
|
|
M_musculus_Dec_2011/
|
160 |
3 years |
nfreese |
IGBF-2696;Add mm10 ENCODE blacklist v2;Sep 22, 2021
|
|
H_sapiens_Feb_2009/
|
159 |
3 years |
nfreese |
IGBF-2696;Add hg19 ENCODE blacklist v2;Sep 22, 2021
|
|
D_melanogaster_Apr_2006/
|
157 |
3 years |
nfreese |
IGBF-2696;Add dm3 ENCODE blacklist v2;Sep 22, 2021
|
|
C_elegans_Oct_2010/
|
156 |
3 years |
nfreese |
IGBF-2696;Add ce10 ENCODE blacklist v2;Sep 22, 2021
|
|
C_elegans_Feb_2013/
|
155 |
3 years |
nfreese |
IGBF-2696;Add ce11 ENCODE blacklist v2;Sep 22, 2021
|
|
F_albicollis_Jun_2013/
|
154 |
3 years |
nfreese |
IGBF-2803:Add Ficedula albicollis genome;Mar 29, 2021
|
|
P_patens_Jan_2018/
|
149 |
3 years |
aloraine |
Add Physcomitrella Jan 2018 v3.3 genome and annotations from Phytozome 318
|
|
L_passim_Apr_2014/
|
148 |
3 years |
nfreese |
Fix off by one in protein match;Feb 2, 2021
|
|
T_aestivum_Aug_2018/
|
125 |
4 years |
aloraine |
IGBF-2548 Use uncompressed file to distribute gene models
|
|
C_sativa_CBDRx_Dec_2018/
|
122 |
4 years |
aloraine |
IGBF-2400 Add C_sativa_CBDRx_Dec_2018 genome
|
|
S_lycopersicum_Feb_2017/
|
120 |
4 years |
aloraine |
Add multi-exon Cufflinks gene models from article titled Expanding Alternative S…
|
|
S_cerevisiae_Apr_2011/
|
117 |
4 years |
aloraine |
Update budding yeast gene model annotations and annots.xml configuration
|
|
X_tropicalis_Jul_2016/
|
116 |
4 years |
aloraine |
Add Xenopus tropicalis Jul 2016 assembly with RefSeq All (ncbiRefSeq) gene model…
|
|
D_melanogaster_Jul_2014/
|
111 |
5 years |
aloraine |
IGBF-1492 - Add note indicating FlyBase models came from FlyBase original GFF
|
|
D_pulex_Sep_2016/
|
108 |
5 years |
aloraine |
IGBF-1915 - Add water flea (Daphnia) genomes
|
|
D_magna_Apr_2010/
|
108 |
5 years |
aloraine |
IGBF-1915 - Add water flea (Daphnia) genomes
|
|
D_magna_Jan_2019/
|
108 |
5 years |
aloraine |
IGBF-1915 - Add water flea (Daphnia) genomes
|
|
D_pulex_Feb_2011/
|
108 |
5 years |
aloraine |
IGBF-1915 - Add water flea (Daphnia) genomes
|
|
C_albicans_WO-1_Dec_2013/
|
107 |
5 years |
aloraine |
IGBF-1498 Add C. albicans Dec 2013 assembly and annotations
|
|
A_rostrata_Oct_2016/
|
106 |
5 years |
aloraine |
Add American eel as per community request - see IGBF-1546
|
|
C_albicans_WO-1_Jul_2010/
|
106 |
5 years |
aloraine |
Add American eel as per community request - see IGBF-1546
|
|
A_gambiae_Oct_2006/
|
105 |
5 years |
aloraine |
Fix close tag
|
|
A_thaliana_Apr_2008/
|
103 |
5 years |
aloraine |
Use tabix-indexed files for TAIR8 annotations
|
|
C_sabaeus_Mar_2014/
|
94 |
5 years |
aloraine |
Add green monkey sequence
|
|
C_albicans_SC5314_Nov_2008/
|
90 |
5 years |
aloraine |
Add Candida albicans SC5314 Assembly 22 Jun_2014
|
|
C_albicans_SC5314_Jun_2014/
|
90 |
5 years |
aloraine |
Add Candida albicans SC5314 Assembly 22 Jun_2014
|
|
D_rerio_Jul_2010/
|
88 |
5 years |
aloraine |
Add description for new genome versions ce11, chlSab2, C. albicans
|
|
D_rerio_May_2017/
|
87 |
5 years |
aloraine |
Add zebrafish May 2017 genome and annotations
|
|
B_taurus_Jun_2014/
|
86 |
5 years |
aloraine |
Add HEADER.md for rat & cow; Fix error
|
|
R_norvegicus_Mar_2012/
|
86 |
5 years |
aloraine |
Add HEADER.md for rat & cow; Fix error
|
|
R_norvegicus_Jul_2014/
|
82 |
6 years |
aloraine |
Add rn6 (rat)
|
|
A_melanoleuca_Dec_2009/
|
80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
|
|
A_gambiae_Feb_2003/
|
80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
|
|
X_tropicalis_Nov_2009/
|
80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
|
|
H_sapiens_Mar_2006/
|
80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
|
|
F_catus_Sep_2011/
|
80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
|
|
H_sapiens_May_2004/
|
80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
|
|
P_troglodytes_Oct_2010/
|
80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
|
|
G_gallus_Nov_2011/
|
80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
|
|
C_porcellus_Feb_2008/
|
80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
|
|
M_musculus_Aug_2005/
|
80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
|
|
L_africana_Jul_2009/
|
80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
|
|
M_musculus_Jul_2007/
|
80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
|
|
T_rubripes_Oct_2011/
|
80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
|
|
A_mellifera_Jan_2005/
|
80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
|
|
N_vectensis_Jun_2007/
|
80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
|
|
C_elegans_May_2008/
|
80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
|
|
O_aries_Feb_2010/
|
80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
|
|
S_cerevisiae_Jun_2008/
|
80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
|
|
M_musculus_Feb_2006/
|
80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
|
|
E_caballus_Sep_2007/
|
80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
|
|
B_taurus_Oct_2011/
|
80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
|
|
E_coli_K12-MG1655_Jan_2012/
|
80 |
6 years |
aloraine |
Remove broken link to UCSC downloads page (it moved)
|
|
A_thaliana_Jun_2009/
|
76 |
6 years |
aloraine |
Load Araport gene models instead of TAIR10 mRNA
|
|
S_tuberosum_DM_Jul_2011/
|
74 |
6 years |
aloraine |
Add gene model annotations converted from http://solanaceae.plantbiology.msu.edu…
|
|
Z_mays_B73_Mar_2010/
|
64 |
6 years |
aloraine |
Add Zea Mays B73 RefGenv2 genome assembly and annotations, from Maize genome dat…
|
|
Y_lipolytica_PO1f_May_2014/
|
63 |
6 years |
aloraine |
Add Y_lipolytica genomes, collected from Genbank
|
|
Y_lipolytica_CLIB122_Jul_2004/
|
63 |
6 years |
aloraine |
Add Y_lipolytica genomes, collected from Genbank
|
|
Y_lipolytica_WSH-Z06_Mar_2014/
|
63 |
6 years |
aloraine |
Add Y_lipolytica genomes, collected from Genbank
|
|
V_vinifera_Mar_2010/
|
62 |
6 years |
aloraine |
Add 12X March 2010 wine grape draft genome Vitis vinifera genome assembly
|
|
V_carteri_Jul_2010/
|
61 |
6 years |
aloraine |
Add Volvox carteri f. nagariensis, Eve Jul 2010 assembly, collected from Phytozo…
|
|
T_parvula_May_2012/
|
60 |
6 years |
aloraine |
Add Thellungiella parvula (salt cress) v2, May 2012 genome assembly
|
|
T_kodakaraensis_KOD1_May_2004/
|
59 |
6 years |
aloraine |
Add Thermococcus kodakaraensis May 2004 genome, collected from Genbank accession…
|
|
T_castaneum_Mar_2008/
|
58 |
6 years |
aloraine |
Add Tribolium castaneum (March 2008) red flour beetle
|
|
S_lycopersicum_May_2012/
|
56 |
6 years |
aloraine |
Add Solanum lycopersicum (tomato) May 2012/SL2.40 genome assembly
|
|
S_lycopersicum_Feb_2014/
|
55 |
6 years |
aloraine |
Add Solanum lycopersicum (tomato) May 2012/SL2.40 and Feb 2014/SL2.50 genome ass…
|
|
S_bicolor_Jan_2009/
|
53 |
6 years |
aloraine |
Add Sorghum bicolor v1.0 and v2.0 (June 2013) genome assemblies, collected from …
|
|
S_bicolor_Jun_2013/
|
53 |
6 years |
aloraine |
Add Sorghum bicolor v1.0 and v2.0 (June 2013) genome assemblies, collected from …
|
|
R_communis_May_2008/
|
52 |
6 years |
aloraine |
Add Ricinis communis TIGR/JCVI v0.1 assembly, castor bean
|
|
P_trichocarpa_Aug_2012/
|
46 |
6 years |
aloraine |
Add Populus trichocarpa v2 and v3 genomes, collected from Phytozome
|
|
P_trichocarpa_Jan_2010/
|
46 |
6 years |
aloraine |
Add Populus trichocarpa v2 and v3 genomes, collected from Phytozome
|
|
P_persica_Apr_2010/
|
45 |
6 years |
aloraine |
Add Prunus persica v1 genome assembly, collected from Phytozome v7
|
|
P_patens_Jan_2008/
|
44 |
6 years |
aloraine |
Add Physcomitrella patens Jan 2008 genome from CossMoss
|
|
O_sativa_japonica_Jun_2009/
|
43 |
6 years |
aloraine |
Add Oryza sativa japonica June 2009 and Oryza sativa japonica variety Os-Nipponb…
|
|
O_sativa_japonica_Oct_2011/
|
43 |
6 years |
aloraine |
Add Oryza sativa japonica June 2009 and Oryza sativa japonica variety Os-Nipponb…
|
|
M_truncatula_Mar_2009/
|
40 |
6 years |
aloraine |
Add Medicago truncatula Mt3.0 release from Phytozome v7
|
|
M_domestica_Borkh_Jun_2017/
|
38 |
6 years |
aloraine |
Add Malus domestica Borkh (GDDH13 Version 1.1) apple genome assembly and annotat…
|
|
M_acuminata_DH_Pahang_Jan_2016/
|
37 |
6 years |
aloraine |
Add Musa acuminata DH Pahang (Jan 2016) banana (v2) genome assembly and annotati…
|
|
G_max_Jan_2014/
|
35 |
6 years |
aloraine |
Add Glycine max (soybean) Gmax_275_v2.0 genome assembly and annotations, collect…
|
|
G_max_Aug_2010/
|
34 |
6 years |
aloraine |
Add Glycine max Glyma1 soybean genome assembly and annotations, collected from P…
|
|
F_vesca_Sep_2011/
|
32 |
6 years |
aloraine |
Add Fragaria vesca (woodland strawberry) v1
|
|
D_discoideum_Ax4_May_2009/
|
23 |
6 years |
aloraine |
Add Dictyostelim discoideum (slime mold) May 2009 assembly and annotations, from…
|
|
C_sativa_DH55_Apr_2014/
|
22 |
6 years |
aloraine |
Add Camelina sativa (false flax) April 2014 assembly
|
|
C_reinhardtii_Nov_2010/
|
21 |
6 years |
aloraine |
Add Chlamydomonas reinhardtii JGI v4 assembly
|
|
C_papaya_Aug_2010/
|
19 |
6 years |
aloraine |
Add Carica papaya genome assembly, from Phytozome
|
|
B_distachyon_Aug_2010/
|
14 |
6 years |
aloraine |
Add Brachypodium distachyon JGI v1.0 8x assembly
|
|
A_lyrata_Apr_2011/
|
5 |
6 years |
aloraine |
Add Arabidopsis lyrata genome assembly and annotations, from Phytozome
|
synonyms.txt
|
181
|
7 months |
aloraine |
Support tardigrade (water bear) Hypsibius exemplaris strain Z151 nHd_3.1 genome …
|
|
contents.txt
|
181
|
7 months |
aloraine |
Support tardigrade (water bear) Hypsibius exemplaris strain Z151 nHd_3.1 genome …
|
|
.htaccess
|
181
|
7 months |
aloraine |
Support tardigrade (water bear) Hypsibius exemplaris strain Z151 nHd_3.1 genome …
|
|
species.txt
|
181
|
7 months |
aloraine |
Support tardigrade (water bear) Hypsibius exemplaris strain Z151 nHd_3.1 genome …
|
|
HEADER.md
|
180
|
13 months |
aloraine |
IGBF-3395 Improve formatting
|
|
favicon.ico
|
2
|
6 years |
aloraine |
Show this in place of a folder icon in IGB Available Data Sets browser
|
