/[genomes]/quickload
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Index of /quickload

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Directory revision: 74 (of 113)
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File Rev. Age Author Last log entry
 Parent Directory        
A_gambiae_Feb_2003/  4  14 months  aloraine   Add 2003 mosquito (malaria vector) genome assembly, EST, mRNA, and gene model an…
A_lyrata_Apr_2011/  5  14 months  aloraine   Add Arabidopsis lyrata genome assembly and annotations, from Phytozome
A_melanoleuca_Dec_2009/  6  14 months  aloraine   Add latest panda genome assembly
A_mellifera_Jan_2005/  12  14 months  aloraine   Add latest honeybee assembly Jan 2005 Baylor 2.0/apiMel2
A_thaliana_Apr_2008/  13  14 months  aloraine   Add TAIR8 genome assembly
A_thaliana_Jun_2009/  1  14 months  aloraine   Add Arabidopsis thaliana TAIR9/10 genome assembly sequence file and annotations …
B_distachyon_Aug_2010/  14  14 months  aloraine   Add Brachypodium distachyon JGI v1.0 8x assembly
B_taurus_Oct_2011/  16  14 months  aloraine   Add Bos taurus (Oct 2011) cow (Baylor Btau_4.6.1/bosTau7)
C_albicans_SC5314_Nov_2008/  11  14 months  aloraine   Add assemblies from www.candidagenome.org
C_albicans_WO-1_Jul_2010/  11  14 months  aloraine   Add assemblies from www.candidagenome.org
C_elegans_May_2008/  18  14 months  aloraine   Add C elegans assembles: May 2008 (WS190/ce6) and Oct 2010 (WS220/ce10)
C_elegans_Oct_2010/  18  14 months  aloraine   Add C elegans assembles: May 2008 (WS190/ce6) and Oct 2010 (WS220/ce10)
C_papaya_Aug_2010/  19  14 months  aloraine   Add Carica papaya genome assembly, from Phytozome
C_porcellus_Feb_2008/  20  14 months  aloraine   Add Cavia porcellus (Feb 2008) guinea pig (cavPor3) assembly
C_reinhardtii_Nov_2010/  21  14 months  aloraine   Add Chlamydomonas reinhardtii JGI v4 assembly
C_sativa_DH55_Apr_2014/  22  14 months  aloraine   Add Camelina sativa (false flax) April 2014 assembly
D_discoideum_Ax4_May_2009/  23  14 months  aloraine   Add Dictyostelim discoideum (slime mold) May 2009 assembly and annotations, from…
D_melanogaster_Apr_2006/  24  14 months  aloraine   Add Drosophila melanogaster (Apr 2006) fruit fly (dm3/BDGP R5) assembly, collect…
D_melanogaster_Jul_2014/  25  14 months  aloraine   Add Drosophila melanogaster (Jul 2014) fruit fly (dmel_r6.03_FB2014_06) assembly…
D_rerio_Jul_2010/  26  14 months  aloraine   Add Danio rerio (Jul 2010) zebrafish (danRer7/Zv9) assembly and annotations
E_caballus_Sep_2007/  27  14 months  aloraine   Add Equus caballus (Sep 2007) horse (equCab2) genome assembly and annotations
E_coli_K12-MG1655_Jan_2012/  30  14 months  aloraine   Add HEADER (same as for UCSC genomes)
F_catus_Sep_2011/  31  14 months  aloraine   Add Felis catus (Sep 2011) cat (ICGSC Felis_catus 6.2/felCat5) genome assembly c…
F_vesca_Sep_2011/  32  14 months  aloraine   Add Fragaria vesca (woodland strawberry) v1
G_gallus_Nov_2011/  33  14 months  aloraine   Add Gallus gallus (Nov 2011) chicken (galGal4/ICGC Gallus-gallus-4.0) assembly a…
G_max_Aug_2010/  34  14 months  aloraine   Add Glycine max Glyma1 soybean genome assembly and annotations, collected from P…
G_max_Jan_2014/  35  14 months  aloraine   Add Glycine max (soybean) Gmax_275_v2.0 genome assembly and annotations, collect…
H_sapiens_Dec_2013/  15  14 months  aloraine   Add Homo sapiens Mar 2006 NCBI36/hg18 assembly
H_sapiens_Feb_2009/  15  14 months  aloraine   Add Homo sapiens Mar 2006 NCBI36/hg18 assembly
H_sapiens_Mar_2006/  15  14 months  aloraine   Add Homo sapiens Mar 2006 NCBI36/hg18 assembly
H_sapiens_May_2004/  17  14 months  aloraine   Add Homo sapiens Mar 2006 NCBI36/hg18 assembly
L_africana_Jul_2009/  36  14 months  aloraine   Add Loxodonta africana (Jul 2009) elephant (loxAfr3), collected from UCSC
L_passim_Apr_2014/  65  14 months  aloraine   Add Lotmaria passim, strain SF, Crithidia mellificae strain SF, whole genome sho…
M_acuminata_DH_Pahang_Jan_2016/  37  14 months  aloraine   Add Musa acuminata DH Pahang (Jan 2016) banana (v2) genome assembly and annotati…
M_domestica_Borkh_Jun_2017/  38  14 months  aloraine   Add Malus domestica Borkh (GDDH13 Version 1.1) apple genome assembly and annotat…
M_musculus_Dec_2011/  39  14 months  aloraine   Add mouse genomes mm8, mm9, mm10
M_musculus_Feb_2006/  39  14 months  aloraine   Add mouse genomes mm8, mm9, mm10
M_musculus_Jul_2007/  39  14 months  aloraine   Add mouse genomes mm8, mm9, mm10
M_truncatula_Mar_2009/  40  14 months  aloraine   Add Medicago truncatula Mt3.0 release from Phytozome v7
N_vectensis_Jun_2007/  42  14 months  aloraine   Add Nematostella vectensis, starlet sea anemone
O_aries_Feb_2010/  41  14 months  aloraine   Add Ovis aries (Feb 2010) sheep (ISGC Ovis_aries_1/oviAri1) genome assembly, col…
O_sativa_japonica_Jun_2009/  43  14 months  aloraine   Add Oryza sativa japonica June 2009 and Oryza sativa japonica variety Os-Nipponb…
O_sativa_japonica_Oct_2011/  43  14 months  aloraine   Add Oryza sativa japonica June 2009 and Oryza sativa japonica variety Os-Nipponb…
P_patens_Jan_2008/  44  14 months  aloraine   Add Physcomitrella patens Jan 2008 genome from CossMoss
P_persica_Apr_2010/  45  14 months  aloraine   Add Prunus persica v1 genome assembly, collected from Phytozome v7
P_trichocarpa_Aug_2012/  46  14 months  aloraine   Add Populus trichocarpa v2 and v3 genomes, collected from Phytozome
P_trichocarpa_Jan_2010/  46  14 months  aloraine   Add Populus trichocarpa v2 and v3 genomes, collected from Phytozome
P_troglodytes_Oct_2010/  47  14 months  aloraine   Add Pan troglodytes (Oct 2010) chimpanzee (CGSC 2.1.3/panTro3) collected from UC…
R_communis_May_2008/  52  14 months  aloraine   Add Ricinis communis TIGR/JCVI v0.1 assembly, castor bean
R_norvegicus_Mar_2012/  50  14 months  aloraine   Add Rattus Norvegicus (Mar 2012) rat (RGSC 5.0/rn5) genome assembly collected fr…
S_bicolor_Jan_2009/  53  14 months  aloraine   Add Sorghum bicolor v1.0 and v2.0 (June 2013) genome assemblies, collected from …
S_bicolor_Jun_2013/  53  14 months  aloraine   Add Sorghum bicolor v1.0 and v2.0 (June 2013) genome assemblies, collected from …
S_cerevisiae_Apr_2011/  54  14 months  aloraine   Add S. cerevisiae strain S288C (Apr 2011) budding yeast (sacCer3) genome assembl…
S_cerevisiae_Jun_2008/  8  14 months  aloraine   Describe contents
S_lycopersicum_Feb_2014/  55  14 months  aloraine   Add Solanum lycopersicum (tomato) May 2012/SL2.40 and Feb 2014/SL2.50 genome ass…
S_lycopersicum_Feb_2017/  55  14 months  aloraine   Add Solanum lycopersicum (tomato) May 2012/SL2.40 and Feb 2014/SL2.50 genome ass…
S_lycopersicum_May_2012/  56  14 months  aloraine   Add Solanum lycopersicum (tomato) May 2012/SL2.40 genome assembly
S_pombe_May_2012/  57  14 months  aloraine   Add S. pombe (May 2012) fission yeast genome assembly and annotations
S_tuberosum_DM_Jul_2011/  74  14 months  aloraine   Add gene model annotations converted from http://solanaceae.plantbiology.msu.edu
T_castaneum_Mar_2008/  58  14 months  aloraine   Add Tribolium castaneum (March 2008) red flour beetle
T_kodakaraensis_KOD1_May_2004/  59  14 months  aloraine   Add Thermococcus kodakaraensis May 2004 genome, collected from Genbank accession…
T_parvula_May_2012/  60  14 months  aloraine   Add Thellungiella parvula (salt cress) v2, May 2012 genome assembly
T_rubripes_Oct_2011/  48  14 months  aloraine   Add Takifugu rubripes (Oct 2011) Fugu (FUGU5/fr3) genome assembly and annotation…
V_carteri_Jul_2010/  61  14 months  aloraine   Add Volvox carteri f. nagariensis, Eve Jul 2010 assembly, collected from Phytozo…
V_vinifera_Mar_2010/  62  14 months  aloraine   Add 12X March 2010 wine grape draft genome Vitis vinifera genome assembly
X_tropicalis_Nov_2009/  51  14 months  aloraine   Add JGI4.2/xenTro3 Xenopus tropicalis genome, Nov 2009 genome assembly and annot…
Y_lipolytica_CLIB122_Jul_2004/  63  14 months  aloraine   Add Y_lipolytica genomes, collected from Genbank
Y_lipolytica_PO1f_May_2014/  63  14 months  aloraine   Add Y_lipolytica genomes, collected from Genbank
Y_lipolytica_WSH-Z06_Mar_2014/  63  14 months  aloraine   Add Y_lipolytica genomes, collected from Genbank
Z_mays_B73_Mar_2010/  64  14 months  aloraine   Add Zea Mays B73 RefGenv2 genome assembly and annotations, from Maize genome dat…
styling/  49  14 months  aloraine   Add Strapdown js and css files for more user-friendly look in Web browsers
.htaccess  66  14 months  aloraine   Add configuration file for style; Assumes styling directory is in DocumentRoot
HEADER.md  67  14 months  aloraine   Add link to quickload repo in viewvc
contents.txt  70  14 months  aloraine   Use version 4.03 released Jul 2011 instead
favicon.ico  2  14 months  aloraine   Show this in place of a folder icon in IGB Available Data Sets browser

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