/[genomes]/quickload
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Index of /quickload

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Directory revision: 113 (of 113)
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File Rev. Age Author Last log entry
 Parent Directory        
A_rostrata_Oct_2016/  106  2 months  aloraine   Add American eel as per community request - see IGBF-1546
F_vesca_Sep_2011/  32  13 months  aloraine   Add Fragaria vesca (woodland strawberry) v1
C_elegans_Oct_2010/  80  12 months  aloraine   Remove broken link to UCSC downloads page (it moved)
Y_lipolytica_PO1f_May_2014/  63  13 months  aloraine   Add Y_lipolytica genomes, collected from Genbank
A_gambiae_Oct_2006/  105  2 months  aloraine   Fix close tag
C_reinhardtii_Nov_2010/  21  13 months  aloraine   Add Chlamydomonas reinhardtii JGI v4 assembly
T_kodakaraensis_KOD1_May_2004/  59  13 months  aloraine   Add Thermococcus kodakaraensis May 2004 genome, collected from Genbank accession…
M_musculus_Dec_2011/  80  12 months  aloraine   Remove broken link to UCSC downloads page (it moved)
A_melanoleuca_Dec_2009/  80  12 months  aloraine   Remove broken link to UCSC downloads page (it moved)
D_pulex_Sep_2016/  108  2 months  aloraine   IGBF-1915 - Add water flea (Daphnia) genomes
T_rubripes_Oct_2011/  80  12 months  aloraine   Remove broken link to UCSC downloads page (it moved)
S_lycopersicum_May_2012/  56  13 months  aloraine   Add Solanum lycopersicum (tomato) May 2012/SL2.40 genome assembly
H_sapiens_Feb_2009/  80  12 months  aloraine   Remove broken link to UCSC downloads page (it moved)
O_sativa_japonica_Jun_2009/  43  13 months  aloraine   Add Oryza sativa japonica June 2009 and Oryza sativa japonica variety Os-Nipponb…
A_gambiae_Feb_2003/  80  12 months  aloraine   Remove broken link to UCSC downloads page (it moved)
C_sativa_DH55_Apr_2014/  22  13 months  aloraine   Add Camelina sativa (false flax) April 2014 assembly
S_bicolor_Jan_2009/  53  13 months  aloraine   Add Sorghum bicolor v1.0 and v2.0 (June 2013) genome assemblies, collected from …
Y_lipolytica_CLIB122_Jul_2004/  63  13 months  aloraine   Add Y_lipolytica genomes, collected from Genbank
X_tropicalis_Nov_2009/  80  12 months  aloraine   Remove broken link to UCSC downloads page (it moved)
C_albicans_WO-1_Dec_2013/  107  2 months  aloraine   IGBF-1498 Add C. albicans Dec 2013 assembly and annotations
P_trichocarpa_Aug_2012/  46  13 months  aloraine   Add Populus trichocarpa v2 and v3 genomes, collected from Phytozome
S_tuberosum_DM_Jul_2011/  74  13 months  aloraine   Add gene model annotations converted from http://solanaceae.plantbiology.msu.edu
H_sapiens_Mar_2006/  80  12 months  aloraine   Remove broken link to UCSC downloads page (it moved)
V_vinifera_Mar_2010/  62  13 months  aloraine   Add 12X March 2010 wine grape draft genome Vitis vinifera genome assembly
P_trichocarpa_Jan_2010/  46  13 months  aloraine   Add Populus trichocarpa v2 and v3 genomes, collected from Phytozome
D_rerio_May_2017/  87  10 months  aloraine   Add zebrafish May 2017 genome and annotations
F_catus_Sep_2011/  80  12 months  aloraine   Remove broken link to UCSC downloads page (it moved)
A_lyrata_Apr_2011/  5  13 months  aloraine   Add Arabidopsis lyrata genome assembly and annotations, from Phytozome
H_sapiens_May_2004/  80  12 months  aloraine   Remove broken link to UCSC downloads page (it moved)
P_troglodytes_Oct_2010/  80  12 months  aloraine   Remove broken link to UCSC downloads page (it moved)
G_gallus_Nov_2011/  80  12 months  aloraine   Remove broken link to UCSC downloads page (it moved)
C_porcellus_Feb_2008/  80  12 months  aloraine   Remove broken link to UCSC downloads page (it moved)
B_distachyon_Aug_2010/  14  13 months  aloraine   Add Brachypodium distachyon JGI v1.0 8x assembly
C_sabaeus_Mar_2014/  94  8 months  aloraine   Add green monkey sequence
D_discoideum_Ax4_May_2009/  23  13 months  aloraine   Add Dictyostelim discoideum (slime mold) May 2009 assembly and annotations, from…
D_magna_Apr_2010/  108  2 months  aloraine   IGBF-1915 - Add water flea (Daphnia) genomes
M_musculus_Aug_2005/  80  12 months  aloraine   Remove broken link to UCSC downloads page (it moved)
R_communis_May_2008/  52  13 months  aloraine   Add Ricinis communis TIGR/JCVI v0.1 assembly, castor bean
C_albicans_SC5314_Nov_2008/  90  10 months  aloraine   Add Candida albicans SC5314 Assembly 22 Jun_2014
D_melanogaster_Apr_2006/  80  12 months  aloraine   Remove broken link to UCSC downloads page (it moved)
M_truncatula_Mar_2009/  40  13 months  aloraine   Add Medicago truncatula Mt3.0 release from Phytozome v7
L_africana_Jul_2009/  80  12 months  aloraine   Remove broken link to UCSC downloads page (it moved)
M_acuminata_DH_Pahang_Jan_2016/  37  13 months  aloraine   Add Musa acuminata DH Pahang (Jan 2016) banana (v2) genome assembly and annotati…
M_domestica_Borkh_Jun_2017/  38  13 months  aloraine   Add Malus domestica Borkh (GDDH13 Version 1.1) apple genome assembly and annotat…
B_taurus_Jun_2014/  86  11 months  aloraine   Add HEADER.md for rat & cow; Fix error
C_elegans_Feb_2013/  89  10 months  aloraine   Add C. elegans Feb 2013 (WBcel235/ce11) genome assembly and gene models
D_melanogaster_Jul_2014/  111  2 months  aloraine   IGBF-1492 - Add note indicating FlyBase models came from FlyBase original GFF
T_castaneum_Mar_2008/  58  13 months  aloraine   Add Tribolium castaneum (March 2008) red flour beetle
C_albicans_WO-1_Jul_2010/  106  2 months  aloraine   Add American eel as per community request - see IGBF-1546
D_magna_Jan_2019/  108  2 months  aloraine   IGBF-1915 - Add water flea (Daphnia) genomes
Z_mays_B73_Mar_2010/  64  13 months  aloraine   Add Zea Mays B73 RefGenv2 genome assembly and annotations, from Maize genome dat…
M_musculus_Jul_2007/  80  12 months  aloraine   Remove broken link to UCSC downloads page (it moved)
S_cerevisiae_Apr_2011/  80  12 months  aloraine   Remove broken link to UCSC downloads page (it moved)
S_lycopersicum_Feb_2017/  55  13 months  aloraine   Add Solanum lycopersicum (tomato) May 2012/SL2.40 and Feb 2014/SL2.50 genome ass…
S_lycopersicum_Feb_2014/  55  13 months  aloraine   Add Solanum lycopersicum (tomato) May 2012/SL2.40 and Feb 2014/SL2.50 genome ass…
S_pombe_May_2012/  57  13 months  aloraine   Add S. pombe (May 2012) fission yeast genome assembly and annotations
G_max_Jan_2014/  35  13 months  aloraine   Add Glycine max (soybean) Gmax_275_v2.0 genome assembly and annotations, collect…
R_norvegicus_Jul_2014/  82  12 months  aloraine   Add rn6 (rat)
styling/  49  13 months  aloraine   Add Strapdown js and css files for more user-friendly look in Web browsers
A_mellifera_Jan_2005/  80  12 months  aloraine   Remove broken link to UCSC downloads page (it moved)
N_vectensis_Jun_2007/  80  12 months  aloraine   Remove broken link to UCSC downloads page (it moved)
C_elegans_May_2008/  80  12 months  aloraine   Remove broken link to UCSC downloads page (it moved)
O_aries_Feb_2010/  80  12 months  aloraine   Remove broken link to UCSC downloads page (it moved)
S_bicolor_Jun_2013/  53  13 months  aloraine   Add Sorghum bicolor v1.0 and v2.0 (June 2013) genome assemblies, collected from …
S_cerevisiae_Jun_2008/  80  12 months  aloraine   Remove broken link to UCSC downloads page (it moved)
P_persica_Apr_2010/  45  13 months  aloraine   Add Prunus persica v1 genome assembly, collected from Phytozome v7
A_thaliana_Jun_2009/  76  13 months  aloraine   Load Araport gene models instead of TAIR10 mRNA
A_thaliana_Apr_2008/  103  2 months  aloraine   Use tabix-indexed files for TAIR8 annotations
T_parvula_May_2012/  60  13 months  aloraine   Add Thellungiella parvula (salt cress) v2, May 2012 genome assembly
M_musculus_Feb_2006/  80  12 months  aloraine   Remove broken link to UCSC downloads page (it moved)
G_max_Aug_2010/  34  13 months  aloraine   Add Glycine max Glyma1 soybean genome assembly and annotations, collected from P…
C_albicans_SC5314_Jun_2014/  90  10 months  aloraine   Add Candida albicans SC5314 Assembly 22 Jun_2014
V_carteri_Jul_2010/  61  13 months  aloraine   Add Volvox carteri f. nagariensis, Eve Jul 2010 assembly, collected from Phytozo…
D_pulex_Feb_2011/  108  2 months  aloraine   IGBF-1915 - Add water flea (Daphnia) genomes
D_rerio_Jul_2010/  88  10 months  aloraine   Add description for new genome versions ce11, chlSab2, C. albicans
E_caballus_Sep_2007/  80  12 months  aloraine   Remove broken link to UCSC downloads page (it moved)
Y_lipolytica_WSH-Z06_Mar_2014/  63  13 months  aloraine   Add Y_lipolytica genomes, collected from Genbank
H_sapiens_Dec_2013/  113  2 months  aloraine   Use correct URL; Fix typo
C_papaya_Aug_2010/  19  13 months  aloraine   Add Carica papaya genome assembly, from Phytozome
B_taurus_Oct_2011/  80  12 months  aloraine   Remove broken link to UCSC downloads page (it moved)
R_norvegicus_Mar_2012/  86  11 months  aloraine   Add HEADER.md for rat & cow; Fix error
P_patens_Jan_2008/  44  13 months  aloraine   Add Physcomitrella patens Jan 2008 genome from CossMoss
L_passim_Apr_2014/  65  13 months  aloraine   Add Lotmaria passim, strain SF, Crithidia mellificae strain SF, whole genome sho…
O_sativa_japonica_Oct_2011/  43  13 months  aloraine   Add Oryza sativa japonica June 2009 and Oryza sativa japonica variety Os-Nipponb…
E_coli_K12-MG1655_Jan_2012/  80  12 months  aloraine   Remove broken link to UCSC downloads page (it moved)
synonyms.txt  112  2 months  aloraine   Include grcH38P12 (patch12) as synonym for H_sapiens_Dec_2013
contents.txt  106  2 months  aloraine   Add American eel as per community request - see IGBF-1546
favicon.ico  2  13 months  aloraine   Show this in place of a folder icon in IGB Available Data Sets browser
HEADER.md  81  12 months  aloraine   Fix typos. Improve wording - make more succinct
.htaccess  104  2 months  aloraine   Add Daphnia genomes
species.txt  106  2 months  aloraine   Add American eel as per community request - see IGBF-1546

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