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Index of /quickload

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Directory revision: 151 (of 167)
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File (rev) Rev. Age Author Last log entry
 Parent Directory        
styling/  49  4 years  aloraine   Add Strapdown js and css files for more user-friendly look in Web browsers
Z_mays_B73_Mar_2010/  64  4 years  aloraine   Add Zea Mays B73 RefGenv2 genome assembly and annotations, from Maize genome dat…
Y_lipolytica_WSH-Z06_Mar_2014/  63  4 years  aloraine   Add Y_lipolytica genomes, collected from Genbank
Y_lipolytica_PO1f_May_2014/  63  4 years  aloraine   Add Y_lipolytica genomes, collected from Genbank
Y_lipolytica_CLIB122_Jul_2004/  63  4 years  aloraine   Add Y_lipolytica genomes, collected from Genbank
X_tropicalis_Nov_2009/  80  3 years  aloraine   Remove broken link to UCSC downloads page (it moved)
X_tropicalis_Jul_2016/  116  2 years  aloraine   Add Xenopus tropicalis Jul 2016 assembly with RefSeq All (ncbiRefSeq) gene model…
V_vinifera_Mar_2010/  62  4 years  aloraine   Add 12X March 2010 wine grape draft genome Vitis vinifera genome assembly
V_carteri_Jul_2010/  61  4 years  aloraine   Add Volvox carteri f. nagariensis, Eve Jul 2010 assembly, collected from Phytozo…
T_rubripes_Oct_2011/  80  3 years  aloraine   Remove broken link to UCSC downloads page (it moved)
T_parvula_May_2012/  60  4 years  aloraine   Add Thellungiella parvula (salt cress) v2, May 2012 genome assembly
T_kodakaraensis_KOD1_May_2004/  59  4 years  aloraine   Add Thermococcus kodakaraensis May 2004 genome, collected from Genbank accession…
T_castaneum_Mar_2008/  58  4 years  aloraine   Add Tribolium castaneum (March 2008) red flour beetle
T_aestivum_Aug_2018/  125  23 months  aloraine   IGBF-2548 Use uncompressed file to distribute gene models
S_tuberosum_DM_Jul_2011/  74  3 years  aloraine   Add gene model annotations converted from http://solanaceae.plantbiology.msu.edu
S_pombe_May_2012/  57  4 years  aloraine   Add S. pombe (May 2012) fission yeast genome assembly and annotations
S_lycopersicum_Sep_2019/  121  2 years  aloraine   List un-assembled contig last
S_lycopersicum_May_2012/  56  4 years  aloraine   Add Solanum lycopersicum (tomato) May 2012/SL2.40 genome assembly
S_lycopersicum_Feb_2017/  120  2 years  aloraine   Add multi-exon Cufflinks gene models from article titled Expanding Alternative S…
S_lycopersicum_Feb_2014/  55  4 years  aloraine   Add Solanum lycopersicum (tomato) May 2012/SL2.40 and Feb 2014/SL2.50 genome ass…
S_cerevisiae_Jun_2008/  80  3 years  aloraine   Remove broken link to UCSC downloads page (it moved)
S_cerevisiae_Apr_2011/  117  2 years  aloraine   Update budding yeast gene model annotations and annots.xml configuration
S_bicolor_Jun_2013/  53  4 years  aloraine   Add Sorghum bicolor v1.0 and v2.0 (June 2013) genome assemblies, collected from …
S_bicolor_Jan_2009/  53  4 years  aloraine   Add Sorghum bicolor v1.0 and v2.0 (June 2013) genome assemblies, collected from …
R_norvegicus_Mar_2012/  86  3 years  aloraine   Add HEADER.md for rat & cow; Fix error
R_norvegicus_Jul_2014/  82  3 years  aloraine   Add rn6 (rat)
R_communis_May_2008/  52  4 years  aloraine   Add Ricinis communis TIGR/JCVI v0.1 assembly, castor bean
P_troglodytes_Oct_2010/  80  3 years  aloraine   Remove broken link to UCSC downloads page (it moved)
P_trichocarpa_Jan_2010/  46  4 years  aloraine   Add Populus trichocarpa v2 and v3 genomes, collected from Phytozome
P_trichocarpa_Aug_2012/  46  4 years  aloraine   Add Populus trichocarpa v2 and v3 genomes, collected from Phytozome
P_persica_Apr_2010/  45  4 years  aloraine   Add Prunus persica v1 genome assembly, collected from Phytozome v7
P_patens_Jan_2018/  149  18 months  aloraine   Add Physcomitrella Jan 2018 v3.3 genome and annotations from Phytozome 318
P_patens_Jan_2008/  44  4 years  aloraine   Add Physcomitrella patens Jan 2008 genome from CossMoss
O_sativa_japonica_Oct_2011/  43  4 years  aloraine   Add Oryza sativa japonica June 2009 and Oryza sativa japonica variety Os-Nipponb…
O_sativa_japonica_Jun_2009/  43  4 years  aloraine   Add Oryza sativa japonica June 2009 and Oryza sativa japonica variety Os-Nipponb…
O_aries_Feb_2010/  80  3 years  aloraine   Remove broken link to UCSC downloads page (it moved)
N_vectensis_Jun_2007/  80  3 years  aloraine   Remove broken link to UCSC downloads page (it moved)
M_truncatula_Mar_2009/  40  4 years  aloraine   Add Medicago truncatula Mt3.0 release from Phytozome v7
M_musculus_Jul_2007/  80  3 years  aloraine   Remove broken link to UCSC downloads page (it moved)
M_musculus_Feb_2006/  80  3 years  aloraine   Remove broken link to UCSC downloads page (it moved)
M_musculus_Dec_2011/  80  3 years  aloraine   Remove broken link to UCSC downloads page (it moved)
M_musculus_Aug_2005/  80  3 years  aloraine   Remove broken link to UCSC downloads page (it moved)
M_domestica_Borkh_Jun_2017/  38  4 years  aloraine   Add Malus domestica Borkh (GDDH13 Version 1.1) apple genome assembly and annotat…
M_acuminata_DH_Pahang_Jan_2016/  37  4 years  aloraine   Add Musa acuminata DH Pahang (Jan 2016) banana (v2) genome assembly and annotati…
L_passim_Apr_2014/  148  19 months  nfreese   Fix off by one in protein match;Feb 2, 2021
L_africana_Jul_2009/  80  3 years  aloraine   Remove broken link to UCSC downloads page (it moved)
H_sapiens_May_2004/  80  3 years  aloraine   Remove broken link to UCSC downloads page (it moved)
H_sapiens_Mar_2006/  80  3 years  aloraine   Remove broken link to UCSC downloads page (it moved)
H_sapiens_Feb_2009/  80  3 years  aloraine   Remove broken link to UCSC downloads page (it moved)
H_sapiens_Dec_2013/  132  23 months  nfreese   Update dbSNP common SNPs to 153
G_max_Jan_2014/  35  4 years  aloraine   Add Glycine max (soybean) Gmax_275_v2.0 genome assembly and annotations, collect…
G_max_Aug_2010/  34  4 years  aloraine   Add Glycine max Glyma1 soybean genome assembly and annotations, collected from P…
G_gallus_Nov_2011/  80  3 years  aloraine   Remove broken link to UCSC downloads page (it moved)
F_vesca_Sep_2011/  32  4 years  aloraine   Add Fragaria vesca (woodland strawberry) v1
F_catus_Sep_2011/  80  3 years  aloraine   Remove broken link to UCSC downloads page (it moved)
E_coli_K12-MG1655_Jan_2012/  80  3 years  aloraine   Remove broken link to UCSC downloads page (it moved)
E_caballus_Sep_2007/  80  3 years  aloraine   Remove broken link to UCSC downloads page (it moved)
D_rerio_May_2017/  87  3 years  aloraine   Add zebrafish May 2017 genome and annotations
D_rerio_Jul_2010/  88  3 years  aloraine   Add description for new genome versions ce11, chlSab2, C. albicans
D_pulex_Sep_2016/  108  3 years  aloraine   IGBF-1915 - Add water flea (Daphnia) genomes
D_pulex_Feb_2011/  108  3 years  aloraine   IGBF-1915 - Add water flea (Daphnia) genomes
D_melanogaster_Jul_2014/  111  3 years  aloraine   IGBF-1492 - Add note indicating FlyBase models came from FlyBase original GFF
D_melanogaster_Apr_2006/  80  3 years  aloraine   Remove broken link to UCSC downloads page (it moved)
D_magna_Jan_2019/  108  3 years  aloraine   IGBF-1915 - Add water flea (Daphnia) genomes
D_magna_Apr_2010/  108  3 years  aloraine   IGBF-1915 - Add water flea (Daphnia) genomes
D_discoideum_Ax4_May_2009/  23  4 years  aloraine   Add Dictyostelim discoideum (slime mold) May 2009 assembly and annotations, from…
C_sativa_DH55_Apr_2014/  22  4 years  aloraine   Add Camelina sativa (false flax) April 2014 assembly
C_sativa_CBDRx_Dec_2018/  122  2 years  aloraine   IGBF-2400 Add C_sativa_CBDRx_Dec_2018 genome
C_sabaeus_Mar_2014/  94  3 years  aloraine   Add green monkey sequence
C_reinhardtii_Nov_2010/  21  4 years  aloraine   Add Chlamydomonas reinhardtii JGI v4 assembly
C_porcellus_Feb_2008/  80  3 years  aloraine   Remove broken link to UCSC downloads page (it moved)
C_papaya_Aug_2010/  19  4 years  aloraine   Add Carica papaya genome assembly, from Phytozome
C_elegans_Oct_2010/  80  3 years  aloraine   Remove broken link to UCSC downloads page (it moved)
C_elegans_May_2008/  80  3 years  aloraine   Remove broken link to UCSC downloads page (it moved)
C_elegans_Feb_2013/  114  2 years  aloraine   Update ce11 C elegans Feb 2013 assembly with data downloaded Feb. 6, 2020
C_albicans_WO-1_Jul_2010/  106  3 years  aloraine   Add American eel as per community request - see IGBF-1546
C_albicans_WO-1_Dec_2013/  107  3 years  aloraine   IGBF-1498 Add C. albicans Dec 2013 assembly and annotations
C_albicans_SC5314_Nov_2008/  90  3 years  aloraine   Add Candida albicans SC5314 Assembly 22 Jun_2014
C_albicans_SC5314_Jun_2014/  90  3 years  aloraine   Add Candida albicans SC5314 Assembly 22 Jun_2014
B_taurus_Oct_2011/  80  3 years  aloraine   Remove broken link to UCSC downloads page (it moved)
B_taurus_Jun_2014/  86  3 years  aloraine   Add HEADER.md for rat & cow; Fix error
B_distachyon_Aug_2010/  14  4 years  aloraine   Add Brachypodium distachyon JGI v1.0 8x assembly
A_thaliana_Jun_2009/  76  3 years  aloraine   Load Araport gene models instead of TAIR10 mRNA
A_thaliana_Apr_2008/  103  3 years  aloraine   Use tabix-indexed files for TAIR8 annotations
A_rostrata_Oct_2016/  106  3 years  aloraine   Add American eel as per community request - see IGBF-1546
A_mellifera_Jan_2005/  80  3 years  aloraine   Remove broken link to UCSC downloads page (it moved)
A_melanoleuca_Dec_2009/  80  3 years  aloraine   Remove broken link to UCSC downloads page (it moved)
A_lyrata_Apr_2011/  5  4 years  aloraine   Add Arabidopsis lyrata genome assembly and annotations, from Phytozome
A_gambiae_Oct_2006/  105  3 years  aloraine   Fix close tag
A_gambiae_Feb_2003/  80  3 years  aloraine   Remove broken link to UCSC downloads page (it moved)
synonyms.txt  112  3 years  aloraine   Include grcH38P12 (patch12) as synonym for H_sapiens_Dec_2013
species.txt  122  2 years  aloraine   IGBF-2400 Add C_sativa_CBDRx_Dec_2018 genome
favicon.ico  2  4 years  aloraine   Show this in place of a folder icon in IGB Available Data Sets browser
contents.txt  140  20 months  aloraine   Add Physcomitrella Jan 2018 v3.3 genome and annotations from Phytozome 318
HEADER.md  151  18 months  aloraine   Specify disk space required to replicate the data
.htaccess  141  20 months  aloraine   Add Physcomitrella Jan 2018 v3.3 genome and annotations from Phytozome 318

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