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<h1>Aedes albopictus (Jan 2024) Asian tiger mosquito (AalbF5) genome assembly</h1> |
<h1>Aedes albopictus (Jan 2024) Asian tiger mosquito (AalbF5)</h1> |
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The files listed below are formatted for visualization in the Integrated Genome |
The files listed below are formatted for visualization in the Integrated Genome Browser, available from <a href="https://bioviz.org">BioViz.org</a>. |
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Browser, available from <a href="https://bioviz.org">BioViz.org</a>. |
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Annotation features (gff) files were downloaded from NCBI Genome (<a href="ncbi.nlm.nih.gov/datasets/genome/">ncbi.nlm.nih.gov/datasets/genome/</a>). See the <a href="annots.xml">annots.xml</a> meta-data file in this directory for details. |
The "bed.gz" format file contains gene models from a GFF-format file downloaded from the NCBI Genomes Web page for <a href="https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_035046485.1/">Genome assembly AalbF5</a>. |
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Files with extension .gz were compressed and indexed using bgzip and |
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tabix tools from <a href="https://www.htslib.org">htslib.org</a>. |
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The file named A_albopictus_Jan_2024.2bit contains sequence data. It was originally downloaded in fasta format from NCBI Genome and then converted to 2bit by running the faToTwoBit program provided by UCSC. The file <a href="genome.txt">genome.txt</a> lists sequences and their sizes. It was made from the A_albopictus_Jan_2024.2bit sequence file using the twoBitInfo program. |
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Both twoBitInfo and faToTwoBit are available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>. |
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