/[genomes]/quickload/A_gambiae_Feb_2003/HEADER.md
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Contents of /quickload/A_gambiae_Feb_2003/HEADER.md

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Revision 4 - (show annotations)
Wed Sep 26 20:23:53 2018 UTC (3 years, 2 months ago) by aloraine
File size: 1259 byte(s)
Add 2003 mosquito (malaria vector) genome assembly, EST, mRNA, and gene model annotations
1 <html>
2 <body>
3 <h1>Anopheles gambiae (Feb 2003) mosquito (anoGam1/IAGP v.MOZ2) genome assembly</h1>
4 <p>
5 The files listed below are formatted for visualization in the Integrated Genome
6 Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
7 </p>
8 <p>
9 Annotation (bed) and alignment (psl) files were downloaded from the UCSC Genome
10 Bioinformatics Table Browser. Each file is named for its corresponding table in the
11 UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
12 this directory for details.
13 </p>
14 <p>
15 Files with extension .gz were compressed and indexed using bgzip and
16 tabix tools from <a href="https://www.htslib.org>htslib.org</a>.
17 </p>
18 <p>
19 The file named A_gambiae_Feb_2003.2bit contains sequence data and was downloaded from the UCSC Genome
20 Bioinformatics <a href="http://hgdownload-test.sdsc.edu/downloads.html">downloads
21 page</a>. To convert a .2bit to fasta, use twoBitToFa. The file
22 <a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from
23 A_gambiae_Feb_2003.2bit sequence file using twoBitInfo.
24 </p>
25 <p>
26 Both twoBitInfo and twoBitToFa are
27 available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
28 </p>
29 </body>
30 </html>

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