/[genomes]/quickload/A_gambiae_Oct_2006/HEADER.md
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Contents of /quickload/A_gambiae_Oct_2006/HEADER.md

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Revision 92 - (show annotations)
Mon Mar 18 22:09:02 2019 UTC (3 years, 2 months ago) by aloraine
File size: 1193 byte(s)
Add malaria mosquito Oct 2006 genome assembly and EnsGene annotations
1 <html>
2 <body>
3 <h1>Anopheles gambiae (Oct 2006) mosquito (AgamP3/anoGam3) genome assembly</h1>
4 <p>
5 The files listed below are formatted for visualization in the Integrated Genome
6 Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
7 </p>
8 <p>
9 Annotation (bed) files were downloaded from the UCSC Genome
10 Bioinformatics Table Browser and Ensembl Biomart Metazoa Database. Each file is named for its corresponding table in the
11 UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
12 this directory for details.
13 </p>
14 <p>
15 Files with extension .gz were compressed and indexed using bgzip and
16 tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
17 </p>
18 <p>
19 The file named A_gambiae_Oct_2006.2bit contains sequence data and is from the UCSC Genome
20 Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
21 <a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from
22 A_gambiae_Oct_2006.2bit sequence file using twoBitInfo.
23 </p>
24 <p>
25 Both twoBitInfo and twoBitToFa are
26 available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
27 </p>
28 </body>
29 </html>

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