/[genomes]/quickload/A_gambiae_Oct_2006/HEADER.md
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Revision 92 - (hide annotations)
Mon Mar 18 22:09:02 2019 UTC (3 years, 3 months ago) by aloraine
File size: 1193 byte(s)
Add malaria mosquito Oct 2006 genome assembly and EnsGene annotations
1 aloraine 92 <html>
2     <body>
3     <h1>Anopheles gambiae (Oct 2006) mosquito (AgamP3/anoGam3) genome assembly</h1>
4     <p>
5     The files listed below are formatted for visualization in the Integrated Genome
6     Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
7     </p>
8     <p>
9     Annotation (bed) files were downloaded from the UCSC Genome
10     Bioinformatics Table Browser and Ensembl Biomart Metazoa Database. Each file is named for its corresponding table in the
11     UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
12     this directory for details.
13     </p>
14     <p>
15     Files with extension .gz were compressed and indexed using bgzip and
16     tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
17     </p>
18     <p>
19     The file named A_gambiae_Oct_2006.2bit contains sequence data and is from the UCSC Genome
20     Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
21     <a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from
22     A_gambiae_Oct_2006.2bit sequence file using twoBitInfo.
23     </p>
24     <p>
25     Both twoBitInfo and twoBitToFa are
26     available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
27     </p>
28     </body>
29     </html>

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