quickload/A_gambiae_Oct_2006/HEADER.md

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<h1>Anopheles gambiae (Oct 2006) mosquito (AgamP3/anoGam3) genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
Annotation (bed) files were downloaded from the UCSC Genome
Bioinformatics Table Browser and Ensembl Biomart Metazoa Database. Each file is named for its corresponding table in the
UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
this directory for details.
</p>
<p>
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
</p>
<p>
The file named A_gambiae_Oct_2006.2bit contains sequence data and is from the UCSC Genome
Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from 
A_gambiae_Oct_2006.2bit sequence file using twoBitInfo.
</p>
<p>
Both twoBitInfo and twoBitToFa are
available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
</p>
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1	aloraine	92	<html>
2			<body>
3			<h1>Anopheles gambiae (Oct 2006) mosquito (AgamP3/anoGam3) genome assembly</h1>
4			<p>
5			The files listed below are formatted for visualization in the Integrated Genome
6			Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
7			</p>
8			<p>
9			Annotation (bed) files were downloaded from the UCSC Genome
10			Bioinformatics Table Browser and Ensembl Biomart Metazoa Database. Each file is named for its corresponding table in the
11			UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
12			this directory for details.
13			</p>
14			<p>
15			Files with extension .gz were compressed and indexed using bgzip and
16			tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
17			</p>
18			<p>
19			The file named A_gambiae_Oct_2006.2bit contains sequence data and is from the UCSC Genome
20			Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
21			<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from
22			A_gambiae_Oct_2006.2bit sequence file using twoBitInfo.
23			</p>
24			<p>
25			Both twoBitInfo and twoBitToFa are
26			available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
27			</p>
28			</body>
29			</html>