/[genomes]/quickload/A_melanoleuca_Dec_2009/HEADER.md
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revision 6 by aloraine, Wed Sep 26 21:27:36 2018 UTC revision 80 by aloraine, Sat Oct 27 01:44:05 2018 UTC
# Line 6  The files listed below are formatted for Line 6  The files listed below are formatted for
6  Browser, available from <a href="https://bioviz.org">BioViz.org</a>.  Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
7  </p>  </p>
8  <p>  <p>
9  Annotation (bed) and alignment (psl) files were downloaded from the UCSC Genome  Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome
10  Bioinformatics Table Browser. Each file is named for its corresponding table in the  Bioinformatics Table Browser. Each file is named for its corresponding table in the
11  UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in  UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
12  this directory for details.  this directory for details.
13  </p>  </p>
14  <p>  <p>
15  Files with extension .gz were compressed and indexed using bgzip and  Files with extension .gz were compressed and indexed using bgzip and
16  tabix tools from <a href="https://www.htslib.org>htslib.org</a>.  tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
17  </p>  </p>
18  <p>  <p>
19  The file named A_melanoleuca_Dec_2009.2bit contains sequence data and was downloaded from the UCSC Genome  The file named A_melanoleuca_Dec_2009.2bit contains sequence data and is from the UCSC Genome
20  Bioinformatics <a href="http://hgdownload-test.sdsc.edu/downloads.html">downloads  Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
 page</a>. To convert a .2bit to fasta, use twoBitToFa. The file  
21  <a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from  <a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from
22  A_melanoleuca_Dec_2009.2bit sequence file using twoBitInfo.  A_melanoleuca_Dec_2009.2bit sequence file using twoBitInfo.
23  </p>  </p>
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