/[genomes]/quickload/A_mellifera_Jan_2005/HEADER.md
ViewVC logotype

Annotation of /quickload/A_mellifera_Jan_2005/HEADER.md

Parent Directory Parent Directory | Revision Log Revision Log


Revision 12 - (hide annotations)
Thu Sep 27 13:27:26 2018 UTC (3 years ago) by aloraine
File size: 1292 byte(s)
Add latest honeybee assembly Jan 2005 Baylor 2.0/apiMel2
1 aloraine 12 <html>
2     <body>
3     <h1>Apis mellifera (honeybee) Jan 2005 (apiMel2/Baylor College of Medicine HGSC v.Amel_2.0 ) genome assembly</h1>
4     <p>
5     The files listed below are formatted for visualization in the Integrated Genome
6     Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
7     </p>
8     <p>
9     Annotation (bed) and alignment (psl) files were downloaded from the UCSC Genome
10     Bioinformatics Table Browser. Each file is named for its corresponding table in the
11     UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
12     this directory for details.
13     </p>
14     <p>
15     Files with extension .gz were compressed and indexed using bgzip and
16     tabix tools from <a href="https://www.htslib.org>htslib.org</a>.
17     </p>
18     <p>
19     The file named A_mellifera_Jan_2005.2bit contains sequence data and was downloaded from the UCSC Genome
20     Bioinformatics <a href="http://hgdownload-test.sdsc.edu/downloads.html">downloads
21     page</a>. To convert a .2bit to fasta, use twoBitToFa. The file
22     <a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from
23     A_mellifera_Jan_2005.2bit sequence file using twoBitInfo.
24     </p>
25     <p>
26     Both twoBitInfo and twoBitToFa are
27     available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
28     </p>
29     </body>
30     </html>

  ViewVC Help
Powered by ViewVC 1.1.26