6 |
Browser, available from <a href="https://bioviz.org">BioViz.org</a>. |
Browser, available from <a href="https://bioviz.org">BioViz.org</a>. |
7 |
</p> |
</p> |
8 |
<p> |
<p> |
9 |
Annotation (bed) and alignment (psl) files were downloaded from the UCSC Genome |
Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome |
10 |
Bioinformatics Table Browser. Each file is named for its corresponding table in the |
Bioinformatics Table Browser. Each file is named for its corresponding table in the |
11 |
UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in |
UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in |
12 |
this directory for details. |
this directory for details. |
13 |
</p> |
</p> |
14 |
<p> |
<p> |
15 |
Files with extension .gz were compressed and indexed using bgzip and |
Files with extension .gz were compressed and indexed using bgzip and |
16 |
tabix tools from <a href="https://www.htslib.org>htslib.org</a>. |
tabix tools from <a href="https://www.htslib.org">htslib.org</a>. |
17 |
</p> |
</p> |
18 |
<p> |
<p> |
19 |
The file named A_mellifera_Jan_2005.2bit contains sequence data and was downloaded from the UCSC Genome |
The file named A_mellifera_Jan_2005.2bit contains sequence data and is from the UCSC Genome |
20 |
Bioinformatics <a href="http://hgdownload-test.sdsc.edu/downloads.html">downloads |
Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file |
|
page</a>. To convert a .2bit to fasta, use twoBitToFa. The file |
|
21 |
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from |
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from |
22 |
A_mellifera_Jan_2005.2bit sequence file using twoBitInfo. |
A_mellifera_Jan_2005.2bit sequence file using twoBitInfo. |
23 |
</p> |
</p> |