/[genomes]/quickload/A_thaliana_Jun_2009/annots.xml
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Annotation of /quickload/A_thaliana_Jun_2009/annots.xml

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Revision 76 - (hide annotations)
Tue Oct 9 17:55:15 2018 UTC (3 years ago) by aloraine
File MIME type: text/xml
File size: 3158 byte(s)
Load Araport gene models instead of TAIR10 mRNA
1 aloraine 1 <files>
2     <file
3     name="Araport11.bed.gz"
4     title="Araport"
5     description="Protein-coding gene models from Araport 11, Nov. 2015"
6     url="A_thaliana_Jun_2009"
7     foreground="000000"
8 aloraine 76 load_hint="Whole Sequence"
9 aloraine 1 name_size="14"
10     show2tracks="true"
11     />
12     <file
13     name="AtRTD2-Van.bed.gz"
14     title="AtRTD2 Vaneechoutte 2017"
15     description="AtRTD2 gene models re-numbered and with CDS annotations from Vaneechoutte, 2017"
16     url="A_thaliana_Jun_2009"
17     foreground="000000"
18     name_size="14"
19     show2tracks="true"
20     />
21     <file
22     name="TAIR10.bed.gz"
23     title="TAIR10 All"
24     description="All gene, transposon, non-coding RNA, and pseudogene annotations from the TAIR10 collection"
25     url="A_thaliana_Jun_2009"
26     name_size="14"
27     show2tracks="true"
28     />
29     <file
30     name="TDNA.bed.gz"
31     title="TDNA insertion lines"
32     description="insertion lines, start of block marks insertion site"
33     url="A_thaliana_Jun_2009"
34     foreground="007c00"
35     show2tracks="false"
36     direction_type="none"
37     />
38     <file
39     name="TAIR10_mRNA.bed.gz"
40 aloraine 76 title="TAIR10 other annotations/TAIR10 mRNA"
41     description="protein-coding gene models"
42 aloraine 1 url="A_thaliana_Jun_2009"
43     foreground="000000"
44     name_size="14"
45     show2tracks="true"
46     />
47     <file
48     name="TAIR10_TE.bed.gz"
49     title="TAIR10 other annotations/transposable elements"
50     description="transposable elements"
51     url="A_thaliana_Jun_2009"
52     name_size="14"
53     show2tracks="true"
54     />
55     <file
56     name="TAIR10_TE_gene.bed.gz"
57     title="TAIR10 other annotations/TE genes"
58     description="transposable element gene models"
59     url="A_thaliana_Jun_2009"
60     name_size="14"
61     show2tracks="true"
62     />
63     <file
64     name="TAIR10_miRNA.bed.gz"
65     title="TAIR10 other annotations/miRNA genes"
66     description="miRNA gene models"
67     url="A_thaliana_Jun_2009"
68     name_size="14"
69     show2tracks="true"
70     />
71     <file
72     name="TAIR10_ncRNA.bed.gz"
73     title="TAIR10 other annotations/ncRNA genes"
74     description="small non-coding RNA gene models"
75     url="A_thaliana_Jun_2009"
76     name_size="14"
77     show2tracks="true"
78     />
79     <file
80     name="TAIR10_pseudogene.bed.gz"
81     title="TAIR10 other annotations/pseudogenes"
82     description="pseudogenic transcript models"
83     url="A_thaliana_Jun_2009"
84     name_size="14"
85     show2tracks="true"
86     />
87     <file
88     name="TAIR10_rRNA.bed.gz"
89     title="TAIR10 other annotations/rRNA genes"
90     description="rRNA gene models"
91     url="A_thaliana_Jun_2009"
92     name_size="14"
93     show2tracks="true"
94     />
95     <file
96     name="TAIR10_snoRNA.bed.gz"
97     title="TAIR10 other annotations/snoRNA genes"
98     description="small nucleolar RNA gene models"
99     url="A_thaliana_Jun_2009"
100     name_size="14"
101     show2tracks="true"
102     />
103     <file
104     name="TAIR10_tRNA.bed.gz"
105     title="TAIR10 other annotations/tRNA genes"
106     description="tRNA gene models"
107     url="A_thaliana_Jun_2009"
108     name_size="14"
109     show2tracks="true"
110     />
111     <file
112     name="TAIR10_snRNA.bed.gz"
113     title="TAIR10 other annotations/snRNA genes"
114     description="small nuclear RNA gene models"
115     url="A_thaliana_Jun_2009"
116     name_size="14"
117     show2tracks="true"
118     />
119     </files>

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