/[genomes]/quickload/A_thaliana_Jun_2009/annots.xml
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Contents of /quickload/A_thaliana_Jun_2009/annots.xml

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Revision 76 - (show annotations)
Tue Oct 9 17:55:15 2018 UTC (2 years, 6 months ago) by aloraine
File MIME type: text/xml
File size: 3158 byte(s)
Load Araport gene models instead of TAIR10 mRNA
1 <files>
2 <file
3 name="Araport11.bed.gz"
4 title="Araport"
5 description="Protein-coding gene models from Araport 11, Nov. 2015"
6 url="A_thaliana_Jun_2009"
7 foreground="000000"
8 load_hint="Whole Sequence"
9 name_size="14"
10 show2tracks="true"
11 />
12 <file
13 name="AtRTD2-Van.bed.gz"
14 title="AtRTD2 Vaneechoutte 2017"
15 description="AtRTD2 gene models re-numbered and with CDS annotations from Vaneechoutte, 2017"
16 url="A_thaliana_Jun_2009"
17 foreground="000000"
18 name_size="14"
19 show2tracks="true"
20 />
21 <file
22 name="TAIR10.bed.gz"
23 title="TAIR10 All"
24 description="All gene, transposon, non-coding RNA, and pseudogene annotations from the TAIR10 collection"
25 url="A_thaliana_Jun_2009"
26 name_size="14"
27 show2tracks="true"
28 />
29 <file
30 name="TDNA.bed.gz"
31 title="TDNA insertion lines"
32 description="insertion lines, start of block marks insertion site"
33 url="A_thaliana_Jun_2009"
34 foreground="007c00"
35 show2tracks="false"
36 direction_type="none"
37 />
38 <file
39 name="TAIR10_mRNA.bed.gz"
40 title="TAIR10 other annotations/TAIR10 mRNA"
41 description="protein-coding gene models"
42 url="A_thaliana_Jun_2009"
43 foreground="000000"
44 name_size="14"
45 show2tracks="true"
46 />
47 <file
48 name="TAIR10_TE.bed.gz"
49 title="TAIR10 other annotations/transposable elements"
50 description="transposable elements"
51 url="A_thaliana_Jun_2009"
52 name_size="14"
53 show2tracks="true"
54 />
55 <file
56 name="TAIR10_TE_gene.bed.gz"
57 title="TAIR10 other annotations/TE genes"
58 description="transposable element gene models"
59 url="A_thaliana_Jun_2009"
60 name_size="14"
61 show2tracks="true"
62 />
63 <file
64 name="TAIR10_miRNA.bed.gz"
65 title="TAIR10 other annotations/miRNA genes"
66 description="miRNA gene models"
67 url="A_thaliana_Jun_2009"
68 name_size="14"
69 show2tracks="true"
70 />
71 <file
72 name="TAIR10_ncRNA.bed.gz"
73 title="TAIR10 other annotations/ncRNA genes"
74 description="small non-coding RNA gene models"
75 url="A_thaliana_Jun_2009"
76 name_size="14"
77 show2tracks="true"
78 />
79 <file
80 name="TAIR10_pseudogene.bed.gz"
81 title="TAIR10 other annotations/pseudogenes"
82 description="pseudogenic transcript models"
83 url="A_thaliana_Jun_2009"
84 name_size="14"
85 show2tracks="true"
86 />
87 <file
88 name="TAIR10_rRNA.bed.gz"
89 title="TAIR10 other annotations/rRNA genes"
90 description="rRNA gene models"
91 url="A_thaliana_Jun_2009"
92 name_size="14"
93 show2tracks="true"
94 />
95 <file
96 name="TAIR10_snoRNA.bed.gz"
97 title="TAIR10 other annotations/snoRNA genes"
98 description="small nucleolar RNA gene models"
99 url="A_thaliana_Jun_2009"
100 name_size="14"
101 show2tracks="true"
102 />
103 <file
104 name="TAIR10_tRNA.bed.gz"
105 title="TAIR10 other annotations/tRNA genes"
106 description="tRNA gene models"
107 url="A_thaliana_Jun_2009"
108 name_size="14"
109 show2tracks="true"
110 />
111 <file
112 name="TAIR10_snRNA.bed.gz"
113 title="TAIR10 other annotations/snRNA genes"
114 description="small nuclear RNA gene models"
115 url="A_thaliana_Jun_2009"
116 name_size="14"
117 show2tracks="true"
118 />
119 </files>

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