/[genomes]/quickload/B_taurus_Jun_2014/HEADER.md
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Revision 86 - (hide annotations)
Mon Dec 10 20:02:12 2018 UTC (3 years, 7 months ago) by aloraine
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Add HEADER.md for rat & cow; Fix error
1 aloraine 86 <html>
2     <body>
3     <h1>Bos taurus (Jun 2014) cow (UMD_3.1.1/bosTau8) genome assembly</h1>
4     <p>
5     The files listed below are formatted for visualization in the Integrated Genome
6     Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
7     </p>
8     <p>
9     Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome
10     Bioinformatics Table Browser. Each file is named for its corresponding table in the
11     UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
12     this directory for details.
13     </p>
14     <p>
15     Files with extension .gz were compressed and indexed using bgzip and
16     tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
17     </p>
18     <p>
19     The file named B_taurus_Jun_2014.2bit contains sequence data and is from the UCSC Genome
20     Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
21     <a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from
22     B_taurus_Jun_2014.2bit sequence file using twoBitInfo.
23     </p>
24     <p>
25     Both twoBitInfo and twoBitToFa are
26     available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
27     </p>
28     </body>
29     </html>

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