/[genomes]/quickload/C_sativa_CBDRx_Dec_2018/HEADER.md
ViewVC logotype

Annotation of /quickload/C_sativa_CBDRx_Dec_2018/HEADER.md

Parent Directory Parent Directory | Revision Log Revision Log


Revision 122 - (hide annotations)
Wed May 27 02:16:15 2020 UTC (3 years, 11 months ago) by aloraine
File size: 1190 byte(s)
IGBF-2400 Add C_sativa_CBDRx_Dec_2018 genome
1 aloraine 122 <html>
2     <body>
3     <h1>Cannabis sativa CBDRx (Dec 2018) genome assembly</h1>
4     <p>
5     The files listed below are formatted for visualization in the Integrated Genome Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
6     </p>
7     <p>
8     The file named C_sativa_CBDRx_Dec_2018.2bit contains sequence data from <a href="http://cannabisgenome.org/cs10files/cs10.fasta.gz">http://cannabisgenome.org/cs10files/cs10.fasta.gz</a> converted to 2bit format using twoBitToFa.
9     </p>
10     <p>
11     The file <a href="genome.txt">genome.txt</a> lists sequences and their
12     sizes. It was made from C_sativa_CBDRx_Dec_2018.2bit using twoBitInfo
13     and then manually edited to list C and M chromosomes after the nuclear
14     chromosome assemblies. Both twoBitInfo and twoBitToFa are available
15     from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
16     </p>
17     <p>
18     For more information about this genome assembly, visit <a href="http://cannabisgenome.org/">cannabisgenome.org</a> and associated article <a href="https://www.biorxiv.org/content/10.1101/458083v4">A complete Cannabis chromosome assembly and adaptive admixture for elevated cannabidiol (CBD) content</a>.
19     </p>
20     </body>
21     </html>

  ViewVC Help
Powered by ViewVC 1.1.26