/[genomes]/quickload/C_sativa_CBDRx_Dec_2018/HEADER.md
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Revision 122 - (show annotations)
Wed May 27 02:16:15 2020 UTC (2 years, 6 months ago) by aloraine
File size: 1190 byte(s)
IGBF-2400 Add C_sativa_CBDRx_Dec_2018 genome
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2 <body>
3 <h1>Cannabis sativa CBDRx (Dec 2018) genome assembly</h1>
4 <p>
5 The files listed below are formatted for visualization in the Integrated Genome Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
6 </p>
7 <p>
8 The file named C_sativa_CBDRx_Dec_2018.2bit contains sequence data from <a href="http://cannabisgenome.org/cs10files/cs10.fasta.gz">http://cannabisgenome.org/cs10files/cs10.fasta.gz</a> converted to 2bit format using twoBitToFa.
9 </p>
10 <p>
11 The file <a href="genome.txt">genome.txt</a> lists sequences and their
12 sizes. It was made from C_sativa_CBDRx_Dec_2018.2bit using twoBitInfo
13 and then manually edited to list C and M chromosomes after the nuclear
14 chromosome assemblies. Both twoBitInfo and twoBitToFa are available
15 from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
16 </p>
17 <p>
18 For more information about this genome assembly, visit <a href="http://cannabisgenome.org/">cannabisgenome.org</a> and associated article <a href="https://www.biorxiv.org/content/10.1101/458083v4">A complete Cannabis chromosome assembly and adaptive admixture for elevated cannabidiol (CBD) content</a>.
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