quickload/D_discoideum_Ax4_May_2009/annots.xml

<files>
<!-- DictyDB annotations -->
  <file name="all.bed" title="ALL" description="All DictyDB annotations, except for EST matches. Includes everything listed below."/>

  <file name="Sequencing_Center.bed" title="Gene predictions" description="Gene predictions for chromosome 2 provided by personal communication with the International consortium of the Dictyostelium Genome Project as described in &quot;The genome of the social amoeba Dictyostelium discoideum.&quot;" url="http://dictybase.org/db/cgi-bin/ggb/gbrowse/dictyBase/?help=citations#Predictions"/>

  <file name="dictyBase_Curator.bed" title="Curated genes (July 2010)" description="Contains models created by dictyBase curators as of July 2010." url="http://dictybase.org/db/cgi-bin/ggb/gbrowse/dictyBase/?help=citations#Gene_Model" load_hint="Whole Sequence" label_field="id"/>

  <file name="geneID_reprediction.bed" title="Geneid re-predictions" description="Gene repredictions performed by Daniel Schneider with assistance from Eric Just using the geneid software using a customized training set based on Dictyostelium curated models (Dec 2007)." url="http://dictybase.org/db/cgi-bin/ggb/gbrowse/dictyBase/?help=citations#Repredictions"/>

  <file name="tRNAscan-SE_analysis.bed" title="tRNAs from tRNAscan-SE" description="tRNAs were predicted at dictyBase using the tRNAscan-SE tool." url="http://dictybase.org/db/cgi-bin/ggb/gbrowse/dictyBase/?help=citations#tRNA"/>

  <file name="Soderbom_group.bed" title="ncRNAs" description="Non-protein-coding RNA genes predicted by the Soderbom group and distributed by DictyDB." url="http://www.ncbi.nlm.nih.gov/pubmed/15333696"/>

  <file name="GenBank.bed" title="ncRNAs (Genbank)" description="Non-protein-coding RNA genes annotated in GenBank and distributed by DictyDB." url="http://dictybase.org/db/cgi-bin/ggb/gbrowse/dictyBase/?help=citations#tRNA"/>

</files>
1	aloraine	23	<files>
2			<!-- DictyDB annotations -->
3			<file name="all.bed" title="ALL" description="All DictyDB annotations, except for EST matches. Includes everything listed below."/>
4
5			<file name="Sequencing_Center.bed" title="Gene predictions" description="Gene predictions for chromosome 2 provided by personal communication with the International consortium of the Dictyostelium Genome Project as described in "The genome of the social amoeba Dictyostelium discoideum."" url="http://dictybase.org/db/cgi-bin/ggb/gbrowse/dictyBase/?help=citations#Predictions"/>
6
7			<file name="dictyBase_Curator.bed" title="Curated genes (July 2010)" description="Contains models created by dictyBase curators as of July 2010." url="http://dictybase.org/db/cgi-bin/ggb/gbrowse/dictyBase/?help=citations#Gene_Model" load_hint="Whole Sequence" label_field="id"/>
8
9			<file name="geneID_reprediction.bed" title="Geneid re-predictions" description="Gene repredictions performed by Daniel Schneider with assistance from Eric Just using the geneid software using a customized training set based on Dictyostelium curated models (Dec 2007)." url="http://dictybase.org/db/cgi-bin/ggb/gbrowse/dictyBase/?help=citations#Repredictions"/>
10
11			<file name="tRNAscan-SE_analysis.bed" title="tRNAs from tRNAscan-SE" description="tRNAs were predicted at dictyBase using the tRNAscan-SE tool." url="http://dictybase.org/db/cgi-bin/ggb/gbrowse/dictyBase/?help=citations#tRNA"/>
12
13			<file name="Soderbom_group.bed" title="ncRNAs" description="Non-protein-coding RNA genes predicted by the Soderbom group and distributed by DictyDB." url="http://www.ncbi.nlm.nih.gov/pubmed/15333696"/>
14
15			<file name="GenBank.bed" title="ncRNAs (Genbank)" description="Non-protein-coding RNA genes annotated in GenBank and distributed by DictyDB." url="http://dictybase.org/db/cgi-bin/ggb/gbrowse/dictyBase/?help=citations#tRNA"/>
16
17			</files>