quickload/D_melanogaster_Jul_2014/HEADER.md

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<h1>Drosophila melanogaster (Jul 2014) fruit fly (dmel_r6.03_FB2014_06/BDGP6) genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
The gene model annotation file (D_melanogaster_Jul_2014.bed.gz) was made from a GTF file
downloaded Nov. 22, 2014 from <a
 href="ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r6.03_FB2014_06/gtf">ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r6.03_FB2014_06
/gtf</a>.
</p>
<p>
The file named D_melanogaster_Jul_2014.2bit contains sequence data. It
was made from fasta file named dmel-all-chromosome-r6.03.fasta.gz
downloaded
from <a href="ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r6.03_FB2014_06/fasta/">ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r6.03_FB2014_06/fasta</a>. To convert it back
to fasta, use twoBitToFa. 
</p>
The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from 
D_melanogaster_Jul_2014.2bit sequence file using twoBitInfo.
</p>
<p>
For more information,
see <a href="http://lorainelab.org/?p=457">this post</a>
at <a href="http://www.lorainelab.org">LoraineLab.org</a>. 
</p>
<p>
You can get twoBitInfo, twoBitToFa, faToTwoBit, and related programs from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
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1	<html>
2	<body>
3	<h1>Drosophila melanogaster (Jul 2014) fruit fly (dmel_r6.03_FB2014_06/BDGP6) genome assembly</h1>
4	<p>
5	The files listed below are formatted for visualization in the Integrated Genome
6	Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
7	</p>
8	<p>
9	The gene model annotation file (D_melanogaster_Jul_2014.bed.gz) was made from a GTF file
10	downloaded Nov. 22, 2014 from <a
11	href="ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r6.03_FB2014_06/gtf">ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r6.03_FB2014_06
12	/gtf</a>.
13	</p>
14	<p>
15	The file named D_melanogaster_Jul_2014.2bit contains sequence data. It
16	was made from fasta file named dmel-all-chromosome-r6.03.fasta.gz
17	downloaded
18	from <a href="ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r6.03_FB2014_06/fasta/">ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r6.03_FB2014_06/fasta</a>. To convert it back
19	to fasta, use twoBitToFa.
20	</p>
21	The file
22	<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from
23	D_melanogaster_Jul_2014.2bit sequence file using twoBitInfo.
24	</p>
25	<p>
26	For more information,
27	see <a href="http://lorainelab.org/?p=457">this post</a>
28	at <a href="http://www.lorainelab.org">LoraineLab.org</a>.
29	</p>
30	<p>
31	You can get twoBitInfo, twoBitToFa, faToTwoBit, and related programs from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
32	</p>
33	</body>
34	</html>