quickload/D_melanogaster_Jul_2014/HEADER.md

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<h1>Drosophila melanogaster (Jul 2014) fruit fly (dmel_r6.03_FB2014_06/BDGP6) genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
The gene model annotation file (D_melanogaster_Jul_2014.bed.gz) was made from a GTF file
downloaded Nov. 22, 2014 from <a
 href="ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r6.03_FB2014_06/gtf">ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r6.03_FB2014_06
/gtf</a>.
</p>
<p>
The file named D_melanogaster_Jul_2014.2bit contains sequence data. It
was made from fasta file named dmel-all-chromosome-r6.03.fasta.gz
downloaded
from <a href="ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r6.03_FB2014_06/fasta/">ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r6.03_FB2014_06/fasta</a>. To convert it back
to fasta, use twoBitToFa. 
</p>
The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from 
D_melanogaster_Jul_2014.2bit sequence file using twoBitInfo.
</p>
<p>
For more information,
see <a href="http://lorainelab.org/?p=457">this post</a>
at <a href="http://www.lorainelab.org">LoraineLab.org</a>. 
</p>
<p>
You can get twoBitInfo, twoBitToFa, faToTwoBit, and related programs from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
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1	aloraine	25	<html>
2			<body>
3			<h1>Drosophila melanogaster (Jul 2014) fruit fly (dmel_r6.03_FB2014_06/BDGP6) genome assembly</h1>
4			<p>
5			The files listed below are formatted for visualization in the Integrated Genome
6			Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
7			</p>
8			<p>
9			The gene model annotation file (D_melanogaster_Jul_2014.bed.gz) was made from a GTF file
10			downloaded Nov. 22, 2014 from <a
11			href="ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r6.03_FB2014_06/gtf">ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r6.03_FB2014_06
12			/gtf</a>.
13			</p>
14			<p>
15			The file named D_melanogaster_Jul_2014.2bit contains sequence data. It
16			was made from fasta file named dmel-all-chromosome-r6.03.fasta.gz
17			downloaded
18			from <a href="ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r6.03_FB2014_06/fasta/">ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r6.03_FB2014_06/fasta</a>. To convert it back
19			to fasta, use twoBitToFa.
20			</p>
21			The file
22			<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from
23			D_melanogaster_Jul_2014.2bit sequence file using twoBitInfo.
24			</p>
25			<p>
26			For more information,
27			see <a href="http://lorainelab.org/?p=457">this post</a>
28			at <a href="http://www.lorainelab.org">LoraineLab.org</a>.
29			</p>
30			<p>
31			You can get twoBitInfo, twoBitToFa, faToTwoBit, and related programs from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
32			</p>
33			</body>
34			</html>