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<h1>Daphnia pulex (Sep 2016) water flea (PA42 v3.0) genome assembly</h1> |
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The files listed below are formatted for visualization in the Integrated Genome Browser, available from <a href="https://bioviz.org">BioViz.org</a>. |
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The file named D_pulex_Sep_2016.2bit contains sequence data from <a href="https://sra-download.ncbi.nlm.nih.gov/traces/wgs03/wgs_aux/FL/TH/FLTH01/FLTH01.1.fsa_nt.gz">https://sra-download.ncbi.nlm.nih.gov/traces/wgs03/wgs_aux/FL/TH/FLTH01/FLTH01.1.fsa_nt.gz</a>. To convert a .2bit to fasta, use twoBitToFa. The file |
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<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from |
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D_pulex_Sep_2016.2bit sequence file using twoBitInfo. Both twoBitInfo and twoBitToFa are |
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available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>. |
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The file named D_pulex_Sep_2016.bed.gz contains gene models obtained from <a href="https://www.g3journal.org/highwire/filestream/483384/field_highwire_adjunct_files/3/File_S3.zip">https://www.g3journal.org/highwire/filestream/483384/field_highwire_adjunct_files/3/File_S3.zip</a>. Files with extension .gz were compressed and indexed using bgzip and |
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tabix tools from <a href="https://www.htslib.org">htslib.org</a>. |
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Data associated with paper: <a href="https://www.ncbi.nlm.nih.gov/pubmed/28235826">A New Reference Genome Assembly for the Microcrustacean Daphnia pulex</a> |
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