/[genomes]/quickload/D_rerio_May_2017/HEADER.md
ViewVC logotype

Contents of /quickload/D_rerio_May_2017/HEADER.md

Parent Directory Parent Directory | Revision Log Revision Log


Revision 87 - (show annotations)
Fri Dec 21 18:14:12 2018 UTC (4 months ago) by aloraine
File size: 1183 byte(s)
Add zebrafish May 2017 genome and annotations
1 <html>
2 <body>
3 <h1>Danio rerio (May 2017) zebrafish (GRCz11/danRer11) genome assembly</h1>
4 <p>
5 The files listed below are formatted for visualization in the Integrated Genome
6 Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
7 </p>
8 <p>
9 Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome
10 Bioinformatics Table Browser. Each file is named for its corresponding table in the
11 UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
12 this directory for details.
13 </p>
14 <p>
15 Files with extension .gz were compressed and indexed using bgzip and
16 tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
17 </p>
18 <p>
19 The file named D_rerio_May_2017.2bit contains sequence data and is from the UCSC Genome
20 Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
21 <a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from
22 D_rerio_May_2017.2bit sequence file using twoBitInfo.
23 </p>
24 <p>
25 Both twoBitInfo and twoBitToFa are
26 available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
27 </p>
28 </body>
29 </html>

  ViewVC Help
Powered by ViewVC 1.1.26