quickload/F_albicollis_Jun_2013/HEADER.md

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<h1>Ficedula albicollis (Jun 2013) collared flycatcher FicAlb1.5 genome assembly (GCF_000247815.1)</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
Annotation (bed) files were downloaded from the NCBI ftp site. See the <a href="annots.xml">annots.xml</a> meta-data file in
this directory for details.
</p>
<p>
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
</p>
<p>
The file named F_albicollis_Jun_2013.2bit contains sequence data and was converted from a fasta file from the NCBI Web site (GCF_000247815.1_FicAlb1.5_genomic.fna.gz). The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from 
F_albicollis_Jun_2013.2bit sequence file using twoBitInfo.
</p>
<p>
Both twoBitInfo and twoBitToFa are
available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
</p>
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1	<html>
2	<body>
3	<h1>Ficedula albicollis (Jun 2013) collared flycatcher FicAlb1.5 genome assembly (GCF_000247815.1)</h1>
4	<p>
5	The files listed below are formatted for visualization in the Integrated Genome
6	Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
7	</p>
8	<p>
9	Annotation (bed) files were downloaded from the NCBI ftp site. See the <a href="annots.xml">annots.xml</a> meta-data file in
10	this directory for details.
11	</p>
12	<p>
13	Files with extension .gz were compressed and indexed using bgzip and
14	tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
15	</p>
16	<p>
17	The file named F_albicollis_Jun_2013.2bit contains sequence data and was converted from a fasta file from the NCBI Web site (GCF_000247815.1_FicAlb1.5_genomic.fna.gz). The file
18	<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from
19	F_albicollis_Jun_2013.2bit sequence file using twoBitInfo.
20	</p>
21	<p>
22	Both twoBitInfo and twoBitToFa are
23	available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
24	</p>
25	</body>
26	</html>