/[genomes]/quickload/F_albicollis_Jun_2013/HEADER.md
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Revision 154 - (hide annotations)
Mon Mar 29 13:35:43 2021 UTC (6 months, 2 weeks ago) by nfreese
File size: 1088 byte(s)
IGBF-2803:Add Ficedula albicollis genome;Mar 29, 2021
1 nfreese 154 <html>
2     <body>
3     <h1>Ficedula albicollis (Jun 2013) collared flycatcher FicAlb1.5 genome assembly (GCF_000247815.1)</h1>
4     <p>
5     The files listed below are formatted for visualization in the Integrated Genome
6     Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
7     </p>
8     <p>
9     Annotation (bed) files were downloaded from the NCBI ftp site. See the <a href="annots.xml">annots.xml</a> meta-data file in
10     this directory for details.
11     </p>
12     <p>
13     Files with extension .gz were compressed and indexed using bgzip and
14     tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
15     </p>
16     <p>
17     The file named F_albicollis_Jun_2013.2bit contains sequence data and was converted from a fasta file from the NCBI Web site (GCF_000247815.1_FicAlb1.5_genomic.fna.gz). The file
18     <a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from
19     F_albicollis_Jun_2013.2bit sequence file using twoBitInfo.
20     </p>
21     <p>
22     Both twoBitInfo and twoBitToFa are
23     available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
24     </p>
25     </body>
26     </html>

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