/[genomes]/quickload/F_albicollis_Jun_2013/HEADER.md
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Contents of /quickload/F_albicollis_Jun_2013/HEADER.md

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Revision 154 - (show annotations)
Mon Mar 29 13:35:43 2021 UTC (5 months, 3 weeks ago) by nfreese
File size: 1088 byte(s)
IGBF-2803:Add Ficedula albicollis genome;Mar 29, 2021
1 <html>
2 <body>
3 <h1>Ficedula albicollis (Jun 2013) collared flycatcher FicAlb1.5 genome assembly (GCF_000247815.1)</h1>
4 <p>
5 The files listed below are formatted for visualization in the Integrated Genome
6 Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
7 </p>
8 <p>
9 Annotation (bed) files were downloaded from the NCBI ftp site. See the <a href="annots.xml">annots.xml</a> meta-data file in
10 this directory for details.
11 </p>
12 <p>
13 Files with extension .gz were compressed and indexed using bgzip and
14 tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
15 </p>
16 <p>
17 The file named F_albicollis_Jun_2013.2bit contains sequence data and was converted from a fasta file from the NCBI Web site (GCF_000247815.1_FicAlb1.5_genomic.fna.gz). The file
18 <a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from
19 F_albicollis_Jun_2013.2bit sequence file using twoBitInfo.
20 </p>
21 <p>
22 Both twoBitInfo and twoBitToFa are
23 available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
24 </p>
25 </body>
26 </html>

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