quickload/G_max_Jan_2014/HEADER.md

<html>
<body>
<h1>Glycine max (Jan 2014) version 2.0 genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
The gene model annotation file (G_max_Jan_2014.bed.gz) was made from GFF and gene information files downloaded in Feb. 2015 from JGI.
</p>
<p>
The file named G_max_Jan_2014.2bit contains sequence data. It
was made from fasta file also downloaded from Phytozome. To convert it back
to fasta, use twoBitToFa. 
</p>
The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from the 2bit sequence file using twoBitInfo.
</p>
<p>
For more information, contact <a href="http://www.lorainelab.org">Ann Loraine</a>. 
</p>
<p>
You can get twoBitInfo, twoBitToFa, faToTwoBit, and related programs from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
</p>
</body>
</html>
1	aloraine	35	<html>
2			<body>
3			<h1>Glycine max (Jan 2014) version 2.0 genome assembly</h1>
4			<p>
5			The files listed below are formatted for visualization in the Integrated Genome
6			Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
7			</p>
8			<p>
9			The gene model annotation file (G_max_Jan_2014.bed.gz) was made from GFF and gene information files downloaded in Feb. 2015 from JGI.
10			</p>
11			<p>
12			The file named G_max_Jan_2014.2bit contains sequence data. It
13			was made from fasta file also downloaded from Phytozome. To convert it back
14			to fasta, use twoBitToFa.
15			</p>
16			The file
17			<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from the 2bit sequence file using twoBitInfo.
18			</p>
19			<p>
20			For more information, contact <a href="http://www.lorainelab.org">Ann Loraine</a>.
21			</p>
22			<p>
23			You can get twoBitInfo, twoBitToFa, faToTwoBit, and related programs from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
24			</p>
25			</body>
26			</html>