quickload/G_max_Jan_2014/HEADER.md

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<h1>Glycine max (Jan 2014) version 2.0 genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
The gene model annotation file (G_max_Jan_2014.bed.gz) was made from GFF and gene information files downloaded in Feb. 2015 from JGI.
</p>
<p>
The file named G_max_Jan_2014.2bit contains sequence data. It
was made from fasta file also downloaded from Phytozome. To convert it back
to fasta, use twoBitToFa. 
</p>
The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from the 2bit sequence file using twoBitInfo.
</p>
<p>
For more information, contact <a href="http://www.lorainelab.org">Ann Loraine</a>. 
</p>
<p>
You can get twoBitInfo, twoBitToFa, faToTwoBit, and related programs from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
</p>
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1	<html>
2	<body>
3	<h1>Glycine max (Jan 2014) version 2.0 genome assembly</h1>
4	<p>
5	The files listed below are formatted for visualization in the Integrated Genome
6	Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
7	</p>
8	<p>
9	The gene model annotation file (G_max_Jan_2014.bed.gz) was made from GFF and gene information files downloaded in Feb. 2015 from JGI.
10	</p>
11	<p>
12	The file named G_max_Jan_2014.2bit contains sequence data. It
13	was made from fasta file also downloaded from Phytozome. To convert it back
14	to fasta, use twoBitToFa.
15	</p>
16	The file
17	<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from the 2bit sequence file using twoBitInfo.
18	</p>
19	<p>
20	For more information, contact <a href="http://www.lorainelab.org">Ann Loraine</a>.
21	</p>
22	<p>
23	You can get twoBitInfo, twoBitToFa, faToTwoBit, and related programs from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
24	</p>
25	</body>
26	</html>