/[genomes]/quickload/G_max_Jan_2014/HEADER.md
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Revision 35 - (show annotations)
Thu Sep 27 14:37:21 2018 UTC (8 months, 3 weeks ago) by aloraine
File size: 981 byte(s)
Add Glycine max (soybean) Gmax_275_v2.0 genome assembly and annotations, collected from Phytozome in Feb. 2015
1 <html>
2 <body>
3 <h1>Glycine max (Jan 2014) version 2.0 genome assembly</h1>
4 <p>
5 The files listed below are formatted for visualization in the Integrated Genome
6 Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
7 </p>
8 <p>
9 The gene model annotation file (G_max_Jan_2014.bed.gz) was made from GFF and gene information files downloaded in Feb. 2015 from JGI.
10 </p>
11 <p>
12 The file named G_max_Jan_2014.2bit contains sequence data. It
13 was made from fasta file also downloaded from Phytozome. To convert it back
14 to fasta, use twoBitToFa.
15 </p>
16 The file
17 <a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from the 2bit sequence file using twoBitInfo.
18 </p>
19 <p>
20 For more information, contact <a href="http://www.lorainelab.org">Ann Loraine</a>.
21 </p>
22 <p>
23 You can get twoBitInfo, twoBitToFa, faToTwoBit, and related programs from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
24 </p>
25 </body>
26 </html>

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