genomes/quickload/HEADER.md

<html>
<title>Integrated Genome Browser QuickLoad Site</title>
<body>
<h1>Welcome to IGB Quickload</h1>
<p>
Data available here are configured for visualization
in the <a href="https://bioviz.org">Integrated Genome Browser</a>.
</p>
<h2>About Quickload</h2>
<p>
A Quickload site is a simple system of directories, sequence files, and
annotation files formatted for visualization in Integrated Genome Browser. It's a convenient
way to share data sets with other labs and with the public. 
</p>
<h2>About this Web site</h2>
<p>
This site is a checked-out copy of this <a href="https://svn.bioviz.org/viewvc/genomes/quickload/">subversion repository</a>. 
</p>
<h2>How to replicate this Web site</h2>
<p>Set up a host with the Apache2 Web server. (It may work with other servers, too. We have never tested that.)</p>
<p>
The Quickload data require around 60 Gb or less.
</p>
<p>Install svn and check out the repository with a read-only user:</p>
<p>`svn co --username=guest co https://svn.bioviz.org/repos/genomes/quickload`</p>
<p>Place the checkedout-repository in your htdocs directory (DocumentRoot)</p>
<p>Configure your Web server to allow fancy directory listings and configurations from .htaccess files residing alongside content.</p>
<p>To support IGB 9.1.4 and lower, add `T_aestivum_Aug_2018.2bit` to directory `quickload/T_aestivum_Aug_2018`.</p> 
<h2>Test it with Integrated Genome Browser</h2>
<p>Open Integrated Genome Browser and select <B>Preferences</B> from the <B>File</B> menu. Select the <B>Data Sources</B> tab. Add your new site as a new Quickload Data Source. The folder contain the file "contents.txt" is the Quickload root directory. See examples within IGB itself.</p>
<hr/>
</body>
</html>
1	aloraine	3	<html>
2			<title>Integrated Genome Browser QuickLoad Site</title>
3			<body>
4	aloraine	150	<h1>Welcome to IGB Quickload</h1>
5	aloraine	3	<p>
6			Data available here are configured for visualization
7			in the <a href="https://bioviz.org">Integrated Genome Browser</a>.
8			</p>
9	aloraine	81	<h2>About Quickload</h2>
10	aloraine	3	<p>
11	aloraine	81	A Quickload site is a simple system of directories, sequence files, and
12			annotation files formatted for visualization in Integrated Genome Browser. It's a convenient
13	aloraine	150	way to share data sets with other labs and with the public.
14	aloraine	3	</p>
15	aloraine	150	<h2>About this Web site</h2>
16	aloraine	3	<p>
17	aloraine	150	This site is a checked-out copy of this <a href="https://svn.bioviz.org/viewvc/genomes/quickload/">subversion repository</a>.
18	aloraine	3	</p>
19	aloraine	150	<h2>How to replicate this Web site</h2>
20			<p>Set up a host with the Apache2 Web server. (It may work with other servers, too. We have never tested that.)</p>
21	aloraine	151	<p>
22			The Quickload data require around 60 Gb or less.
23			</p>
24	aloraine	150	<p>Install svn and check out the repository with a read-only user:</p>
25			<p>`svn co --username=guest co https://svn.bioviz.org/repos/genomes/quickload`</p>
26			<p>Place the checkedout-repository in your htdocs directory (DocumentRoot)</p>
27			<p>Configure your Web server to allow fancy directory listings and configurations from .htaccess files residing alongside content.</p>
28			<p>To support IGB 9.1.4 and lower, add `T_aestivum_Aug_2018.2bit` to directory `quickload/T_aestivum_Aug_2018`.</p>
29			<h2>Test it with Integrated Genome Browser</h2>
30			<p>Open Integrated Genome Browser and select <B>Preferences</B> from the <B>File</B> menu. Select the <B>Data Sources</B> tab. Add your new site as a new Quickload Data Source. The folder contain the file "contents.txt" is the Quickload root directory. See examples within IGB itself.</p>
31			<hr/>
32	aloraine	3	</body>
33			</html>