--- quickload/HEADER.md 2018/09/26 20:21:58 3 +++ quickload/HEADER.md 2021/03/09 20:00:38 151 @@ -1,24 +1,33 @@
-Welcome Integrated Genome Browser QuickLoad. -
+Data available here are configured for visualization in the Integrated Genome Browser.
-+A Quickload site is a simple system of directories, sequence files, and +annotation files formatted for visualization in Integrated Genome Browser. It's a convenient +way to share data sets with other labs and with the public. +
+-A QuickLoad site is a simple system of directories, sequence and other data -files designed for visualization in Integrated Genome Browser. It's a convenient -way to share data sets with other labs and with the public. For more information, - see the IGB User's Guide: -Sharing data using QuickLoad Sites. +This site is a checked-out copy of this subversion repository.
+Set up a host with the Apache2 Web server. (It may work with other servers, too. We have never tested that.)
-All files are version controlled in a publicly-accessible subversion repository https://svn.bioviz.org/viewvc. Contact Professor Ann Loraine for more information. +The Quickload data require around 60 Gb or less.
+Install svn and check out the repository with a read-only user:
+`svn co --username=guest co https://svn.bioviz.org/repos/genomes/quickload`
+Place the checkedout-repository in your htdocs directory (DocumentRoot)
+Configure your Web server to allow fancy directory listings and configurations from .htaccess files residing alongside content.
+To support IGB 9.1.4 and lower, add `T_aestivum_Aug_2018.2bit` to directory `quickload/T_aestivum_Aug_2018`.
+Open Integrated Genome Browser and select Preferences from the File menu. Select the Data Sources tab. Add your new site as a new Quickload Data Source. The folder contain the file "contents.txt" is the Quickload root directory. See examples within IGB itself.
+