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<title>Integrated Genome Browser QuickLoad Site</title> |
<title>Integrated Genome Browser QuickLoad Site</title> |
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<h1>Welcome to IGBQuickload</h1> |
<h1>Welcome to IGB Quickload</h1> |
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Welcome Integrated Genome Browser QuickLoad. |
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Data available here are configured for visualization |
Data available here are configured for visualization |
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in the <a href="https://bioviz.org">Integrated Genome Browser</a>. |
in the <a href="https://bioviz.org">Integrated Genome Browser</a>. |
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<h2>About QuickLoad</h2> |
<h2>About Quickload</h2> |
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A Quickload site is a simple system of directories, sequence files, and |
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annotation files formatted for visualization in Integrated Genome Browser. It's a convenient |
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way to share data sets with other labs and with the public. |
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<h2>About this Web site</h2> |
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A QuickLoad site is a simple system of directories, sequence and other data |
This site is a checked-out copy of this <a href="https://svn.bioviz.org/viewvc/genomes/quickload/">subversion repository</a>. |
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files designed for visualization in Integrated Genome Browser. It's a convenient |
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way to share data sets with other labs and with the public. For more information, |
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see the IGB User's Guide: |
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<a href="https://wiki.transvar.org/display/igbman/Sharing+data+using+QuickLoad+sites">Sharing data using QuickLoad Sites</a>. |
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<h2>How to replicate this Web site</h2> |
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<p>Set up a host with the Apache2 Web server. (It may work with other servers, too. We have never tested that.)</p> |
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<p> |
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All files are version controlled in a <a href="https://svn.bioviz.org/viewvc/genomes/quickload/">publicly-accessible subversion repository</a>. For information on how to checkout out and deploy your own copy, contact Ann Loraine. |
The Quickload data require around 60 Gb or less. |
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<p>Install svn and check out the repository with a read-only user:</p> |
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<p>`svn co --username=guest co https://svn.bioviz.org/repos/genomes/quickload`</p> |
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<p>Place the checkedout-repository in your htdocs directory (DocumentRoot)</p> |
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<p>Configure your Web server to allow fancy directory listings and configurations from .htaccess files residing alongside content.</p> |
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<p>To support IGB 9.1.4 and lower, add `T_aestivum_Aug_2018.2bit` to directory `quickload/T_aestivum_Aug_2018`.</p> |
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<h2>Test it with Integrated Genome Browser</h2> |
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<p>Open Integrated Genome Browser and select <B>Preferences</B> from the <B>File</B> menu. Select the <B>Data Sources</B> tab. Add your new site as a new Quickload Data Source. The folder contain the file "contents.txt" is the Quickload root directory. See examples within IGB itself.</p> |
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