/[genomes]/quickload/HEADER.md
ViewVC logotype

Diff of /quickload/HEADER.md

Parent Directory Parent Directory | Revision Log Revision Log | View Patch Patch

revision 149 by aloraine, Sat Oct 27 01:49:24 2018 UTC revision 150 by aloraine, Tue Mar 9 19:55:59 2021 UTC
# Line 1  Line 1 
1  <html>  <html>
2  <title>Integrated Genome Browser QuickLoad Site</title>  <title>Integrated Genome Browser QuickLoad Site</title>
3  <body>  <body>
4  <h1>Welcome to IGBQuickload</h1>  <h1>Welcome to IGB Quickload</h1>
5  <p>  <p>
6  Data available here are configured for visualization  Data available here are configured for visualization
7  in the <a href="https://bioviz.org">Integrated Genome Browser</a>.  in the <a href="https://bioviz.org">Integrated Genome Browser</a>.
# Line 10  in the <a href="https://bioviz.org">Inte Line 10  in the <a href="https://bioviz.org">Inte
10  <p>  <p>
11  A Quickload site is a simple system of directories, sequence files, and  A Quickload site is a simple system of directories, sequence files, and
12  annotation files formatted for visualization in Integrated Genome Browser. It's a convenient  annotation files formatted for visualization in Integrated Genome Browser. It's a convenient
13  way to share data sets with other labs and with the public. For more information,  way to share data sets with other labs and with the public.
  see the IGB User's Guide:  
 <a href="https://wiki.transvar.org/display/igbman/Sharing+data+using+QuickLoad+sites">Sharing data using Quickload Sites</a>.  
14  </p>  </p>
15    <h2>About this Web site</h2>
16  <p>  <p>
17  All files are version controlled in a <a href="https://svn.bioviz.org/viewvc/genomes/quickload/">publicly-accessible subversion repository</a>. For information on how to check out and deploy your own copy, contact Ann Loraine.  This site is a checked-out copy of this <a href="https://svn.bioviz.org/viewvc/genomes/quickload/">subversion repository</a>.
18  </p>  </p>
19    <h2>How to replicate this Web site</h2>
20    <p>Set up a host with the Apache2 Web server. (It may work with other servers, too. We have never tested that.)</p>
21    <p>Install svn and check out the repository with a read-only user:</p>
22    <p>`svn co --username=guest co https://svn.bioviz.org/repos/genomes/quickload`</p>
23    <p>Place the checkedout-repository in your htdocs directory (DocumentRoot)</p>
24    <p>Configure your Web server to allow fancy directory listings and configurations from .htaccess files residing alongside content.</p>
25    <p>To support IGB 9.1.4 and lower, add `T_aestivum_Aug_2018.2bit` to directory `quickload/T_aestivum_Aug_2018`.</p>
26    <h2>Test it with Integrated Genome Browser</h2>
27    <p>Open Integrated Genome Browser and select <B>Preferences</B> from the <B>File</B> menu. Select the <B>Data Sources</B> tab. Add your new site as a new Quickload Data Source. The folder contain the file "contents.txt" is the Quickload root directory. See examples within IGB itself.</p>
28    <hr/>
29  </body>  </body>
30  </html>  </html>
Legend:
Removed from v.149  
changed lines
  Added in v.150
  ViewVC Help
Powered by ViewVC 1.1.26