--- quickload/HEADER.md 2018/09/27 22:00:02 67 +++ quickload/HEADER.md 2021/03/09 20:00:38 151 @@ -1,24 +1,33 @@ Integrated Genome Browser QuickLoad Site -

Welcome to IGBQuickload

-

-Welcome Integrated Genome Browser QuickLoad. -

+

Welcome to IGB Quickload

Data available here are configured for visualization in the Integrated Genome Browser.

-

About QuickLoad

+

About Quickload

+

+A Quickload site is a simple system of directories, sequence files, and +annotation files formatted for visualization in Integrated Genome Browser. It's a convenient +way to share data sets with other labs and with the public. +

+

About this Web site

-A QuickLoad site is a simple system of directories, sequence and other data -files designed for visualization in Integrated Genome Browser. It's a convenient -way to share data sets with other labs and with the public. For more information, - see the IGB User's Guide: -Sharing data using QuickLoad Sites. +This site is a checked-out copy of this subversion repository.

+

How to replicate this Web site

+

Set up a host with the Apache2 Web server. (It may work with other servers, too. We have never tested that.)

-All files are version controlled in a publicly-accessible subversion repository. For information on how to checkout out and deploy your own copy, contact Ann Loraine. +The Quickload data require around 60 Gb or less.

+

Install svn and check out the repository with a read-only user:

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`svn co --username=guest co https://svn.bioviz.org/repos/genomes/quickload`

+

Place the checkedout-repository in your htdocs directory (DocumentRoot)

+

Configure your Web server to allow fancy directory listings and configurations from .htaccess files residing alongside content.

+

To support IGB 9.1.4 and lower, add `T_aestivum_Aug_2018.2bit` to directory `quickload/T_aestivum_Aug_2018`.

+

Test it with Integrated Genome Browser

+

Open Integrated Genome Browser and select Preferences from the File menu. Select the Data Sources tab. Add your new site as a new Quickload Data Source. The folder contain the file "contents.txt" is the Quickload root directory. See examples within IGB itself.

+