/[genomes]/quickload/H_sapiens_Dec_2013/HEADER.md
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Revision 9 - (hide annotations)
Wed Sep 26 22:18:04 2018 UTC (3 years, 10 months ago) by aloraine
File size: 1280 byte(s)
Add latest human genome version, with annotations, collected by Nowlan Freese
1 aloraine 9 <html>
2     <body>
3     <h1>Homo sapiens (Dec 2013) human being (GRCh38/hg38) genome assembly</h1>
4     <p>
5     The files listed below are formatted for visualization in the Integrated Genome
6     Browser, available from <a href="http://www.bioviz.org/igb">BioViz.org</a>.
7     </p>
8     <p>
9     Annotation (bed) and alignment (psl) files were downloaded from the UCSC Genome
10     Bioinformatics Table Browser. Each file is named for its corresponding table in the
11     UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
12     this directory for details.
13     </p>
14     <p>
15     Files with extension .gz were compressed and indexed using bgzip and
16     tabix tools from <a href="http://samtools.sourceforge.net">samtools.sourceforge.net</a>.
17     </p>
18     <p>
19     The file named H_sapiens_Dec_2013.2bit contains sequence data and was downloaded from the UCSC Genome
20     Bioinformatics <a href="http://hgdownload-test.sdsc.edu/downloads.html">downloads
21     page</a>. To convert a .2bit to fasta, use twoBitToFa. The file
22     <a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from
23     H_sapiens_Dec_2013.2bit sequence file using twoBitInfo.
24     </p>
25     <p>
26     Both twoBitInfo and twoBitToFa are
27     available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
28     </p>
29     </body>
30     </html>

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