/[genomes]/quickload/H_sapiens_Dec_2013/annots.xml
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Annotation of /quickload/H_sapiens_Dec_2013/annots.xml

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Revision 106 - (hide annotations)
Tue Sep 10 20:25:45 2019 UTC (2 years, 10 months ago) by aloraine
File MIME type: text/xml
File size: 3815 byte(s)
Add American eel as per community request - see IGBF-1546
1 aloraine 9 <files>
2 aloraine 96 <file name="H_sapiens_Dec_2013_ncbiRefSeqCurated.bed.gz"
3     title="RefSeq Curated"
4     description="Data from UCSC Table Browser - RefSeq Curated (ncbiRefSeqCurated) table - updated Mar 20, 2019"
5 aloraine 9 url="H_sapiens_Dec_2013/"
6     foreground="000000"
7     name_size="14"
8     direction_type="arrow"
9     label_field="title"
10     background="FFFFFF"
11     load_hint="Whole Sequence"
12 aloraine 96 show2tracks="true"
13 aloraine 9 />
14 aloraine 96 <file name="H_sapiens_Dec_2013_snp151Common.bed.gz"
15     title="Genetics/Common SNPs (151)"
16     description="Data from UCSC Table Browser - common SNPs (snp151Common table) - updated Mar 20, 2019"
17     url="H_sapiens_Dec_2013"
18 aloraine 100 direction_type="none"
19 aloraine 96 name_size="14"
20     label_field="id"
21 aloraine 9 background="FFFFFF"
22 aloraine 100 foreground="1B4C9B"
23 aloraine 96 show2tracks="false"
24     />
25 aloraine 9 <file name="H_sapiens_Dec_2013_all_est.psl.gz"
26 aloraine 96 title="UCSC Tracks/mRNA and EST/All human EST"
27     description="Data from UCSC Table Browser - human EST alignments (all_est table) - updated Mar 21, 2019"
28     url="H_sapiens_Dec_2013"
29 aloraine 9 direction_type="arrow"
30     max_depth="10"
31     name_size="16"
32     background="FFFFFF"
33     foreground="B71725"
34     label_field="id"
35 aloraine 96 show2tracks="true"
36     />
37     <file name="H_sapiens_Dec_2013_all_mrna.psl.gz"
38     title="UCSC Tracks/mRNA and EST/Human mRNAs"
39     description="Data from UCSC Table Browser - human mRNA alignments (all_mrna table) - updated Mar 21, 2019"
40     url="H_sapiens_Dec_2013"
41     direction_type="arrow"
42     max_depth="10"
43     name_size="16"
44     background="FFFFFF"
45     foreground="B71725"
46     label_field="id"
47     show2tracks="true"
48     />
49 aloraine 9 <file name="UCSCTracks/Assembly.bed.gz"
50 aloraine 96 title="UCSC Tracks/Mapping and Sequencing/Assembly"
51 aloraine 106 url="H_sapiens_Dec_2013/UCSCTracks/"
52 aloraine 9 />
53     <file name="UCSCTracks/Hg19_Diff.bed.gz"
54 aloraine 96 title="UCSC Tracks/Mapping and Sequencing/Hg19 Diff"
55 aloraine 106 url="H_sapiens_Dec_2013/UCSCTracks/"
56 aloraine 9 />
57     <file name="UCSCTracks/GENCODE.bed.gz"
58 aloraine 96 title="UCSC Tracks/Genes and Gene Predictions/GENCODE"
59 aloraine 106 url="H_sapiens_Dec_2013/UCSCTracks/"
60 aloraine 9 />
61 aloraine 99 <file name="H_sapiens_Dec_2013_ncbiRefSeq.bed.gz"
62     title="UCSC Tracks/Genes and Gene Predictions/RefSeq All"
63     description="Data from UCSC Table Browser - RefSeq All (ncbiRefSeq table) - updated Mar 20, 2019"
64     url="H_sapiens_Dec_2013"
65     foreground="B71725"
66     name_size="14"
67     direction_type="arrow"
68     label_field="title"
69     background="FFFFFF"
70     show2tracks="true"
71 aloraine 106 url="H_sapiens_Dec_2013/UCSCTracks/"
72 aloraine 99 />
73 aloraine 96 <file name="H_sapiens_Dec_2013_refGene.bed.gz"
74 aloraine 98 title="UCSC Tracks/Genes and Gene Predictions/RefGene (old)"
75     description="Data from UCSC Genome Browser - RefGene track, downloaded Mar 7, 2014"
76     foreground="000000"
77     name_size="14"
78     direction_type="arrow"
79     label_field="title"
80     background="FFFFFF"
81 aloraine 106 url="H_sapiens_Dec_2013/UCSCTracks/"
82 aloraine 96 />
83 aloraine 9 <file name="UCSCTracks/RetroGenes_V9.bed.gz"
84 aloraine 96 title="UCSC Tracks/Genes and Gene Predictions/RetroGenes V9"
85 aloraine 106 url="H_sapiens_Dec_2013/UCSCTracks/"
86 aloraine 9 />
87     <file name="UCSCTracks/CpG_Islands.bed.gz"
88 aloraine 96 title="UCSC Tracks/Regulation/CpG Islands"
89 aloraine 106 url="H_sapiens_Dec_2013/UCSCTracks/"
90 aloraine 9 />
91     <file name="UCSCTracks/RepeatMasker.bed.gz"
92 aloraine 106 <file name="UCSCTracks/RepeatMasker.bed.gz"
93 aloraine 96 title="UCSC Tracks/Repeats/RepeatMasker"
94 aloraine 106 url="H_sapiens_Dec_2013/UCSCTracks/"
95 aloraine 9 />
96     <file name="UCSCTracks/RepeatMasker_Viz.bed.gz"
97 aloraine 96 title="UCSC Tracks/Repeats/RepeatMasker Viz"
98 aloraine 106 url="H_sapiens_Dec_2013/UCSCTracks/"
99 aloraine 9 />
100 aloraine 96 <file name="cytoBand.cyt"
101     title="Cytobands"
102     load_hint="Whole Sequence"
103     />
104 aloraine 9 </files>

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