/[genomes]/quickload/H_sapiens_Dec_2013/annots.xml
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Annotation of /quickload/H_sapiens_Dec_2013/annots.xml

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Revision 98 - (hide annotations)
Sun Mar 24 18:28:56 2019 UTC (3 years, 4 months ago) by aloraine
File MIME type: text/xml
File size: 3371 byte(s)
Highlight genetics data sets; Load RefSeq Curated as new reference gene models
1 aloraine 9 <files>
2 aloraine 96 <file name="H_sapiens_Dec_2013_ncbiRefSeqCurated.bed.gz"
3     title="RefSeq Curated"
4     description="Data from UCSC Table Browser - RefSeq Curated (ncbiRefSeqCurated) table - updated Mar 20, 2019"
5 aloraine 9 url="H_sapiens_Dec_2013/"
6     foreground="000000"
7     name_size="14"
8     direction_type="arrow"
9     label_field="title"
10     background="FFFFFF"
11     load_hint="Whole Sequence"
12 aloraine 96 show2tracks="true"
13 aloraine 9 />
14 aloraine 96 <file name="H_sapiens_Dec_2013_snp151Common.bed.gz"
15     title="Genetics/Common SNPs (151)"
16     description="Data from UCSC Table Browser - common SNPs (snp151Common table) - updated Mar 20, 2019"
17     url="H_sapiens_Dec_2013"
18     name_size="14"
19     label_field="id"
20 aloraine 9 background="FFFFFF"
21 aloraine 96 foreground="000000"
22     show2tracks="false"
23     />
24     <file name="H_sapiens_Dec_2013_ncbiRefSeq.bed.gz"
25     title="UCSC Tracks/mRNA and EST/RefSeq All"
26     description="Data from UCSC Table Browser - RefSeq All (ncbiRefSeq table) - updated Mar 20, 2019"
27     url="H_sapiens_Dec_2013"
28 aloraine 9 foreground="B71725"
29 aloraine 96 name_size="14"
30     direction_type="arrow"
31     label_field="title"
32     background="FFFFFF"
33     show2tracks="true"
34     />
35 aloraine 9 <file name="H_sapiens_Dec_2013_all_est.psl.gz"
36 aloraine 96 title="UCSC Tracks/mRNA and EST/All human EST"
37     description="Data from UCSC Table Browser - human EST alignments (all_est table) - updated Mar 21, 2019"
38     url="H_sapiens_Dec_2013"
39 aloraine 9 direction_type="arrow"
40     max_depth="10"
41     name_size="16"
42     background="FFFFFF"
43     foreground="B71725"
44     label_field="id"
45 aloraine 96 show2tracks="true"
46     />
47     <file name="H_sapiens_Dec_2013_all_mrna.psl.gz"
48     title="UCSC Tracks/mRNA and EST/Human mRNAs"
49     description="Data from UCSC Table Browser - human mRNA alignments (all_mrna table) - updated Mar 21, 2019"
50     url="H_sapiens_Dec_2013"
51     direction_type="arrow"
52     max_depth="10"
53     name_size="16"
54     background="FFFFFF"
55     foreground="B71725"
56     label_field="id"
57     show2tracks="true"
58     />
59 aloraine 9 <file name="UCSCTracks/Assembly.bed.gz"
60 aloraine 96 title="UCSC Tracks/Mapping and Sequencing/Assembly"
61 aloraine 9 />
62     <file name="UCSCTracks/Hg19_Diff.bed.gz"
63 aloraine 96 title="UCSC Tracks/Mapping and Sequencing/Hg19 Diff"
64 aloraine 9 />
65     <file name="UCSCTracks/GENCODE.bed.gz"
66 aloraine 96 title="UCSC Tracks/Genes and Gene Predictions/GENCODE"
67 aloraine 9 />
68 aloraine 96 <file name="H_sapiens_Dec_2013_refGene.bed.gz"
69 aloraine 98 title="UCSC Tracks/Genes and Gene Predictions/RefGene (old)"
70     description="Data from UCSC Genome Browser - RefGene track, downloaded Mar 7, 2014"
71     foreground="000000"
72     name_size="14"
73     direction_type="arrow"
74     label_field="title"
75     background="FFFFFF"
76 aloraine 96 />
77 aloraine 9 <file name="UCSCTracks/RetroGenes_V9.bed.gz"
78 aloraine 96 title="UCSC Tracks/Genes and Gene Predictions/RetroGenes V9"
79 aloraine 9 />
80     <file name="UCSCTracks/CpG_Islands.bed.gz"
81 aloraine 96 title="UCSC Tracks/Regulation/CpG Islands"
82 aloraine 9 />
83     <file name="UCSCTracks/RepeatMasker.bed.gz"
84 aloraine 96 title="UCSC Tracks/Repeats/RepeatMasker"
85 aloraine 9 />
86     <file name="UCSCTracks/RepeatMasker_Viz.bed.gz"
87 aloraine 96 title="UCSC Tracks/Repeats/RepeatMasker Viz"
88 aloraine 9 />
89 aloraine 96 <file name="cytoBand.cyt"
90     title="Cytobands"
91     load_hint="Whole Sequence"
92     />
93 aloraine 9 </files>

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