/[genomes]/quickload/H_sapiens_Dec_2013/annots.xml
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Contents of /quickload/H_sapiens_Dec_2013/annots.xml

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Revision 99 - (show annotations)
Sun Mar 24 18:37:02 2019 UTC (5 years ago) by aloraine
File MIME type: text/xml
File size: 3396 byte(s)
Error occurred while calculating annotation data.
Move RefSeq All to Genes and Gene Predictions folder because these have CDS annotations and are not simple alignments
1 <files>
2 <file name="H_sapiens_Dec_2013_ncbiRefSeqCurated.bed.gz"
3 title="RefSeq Curated"
4 description="Data from UCSC Table Browser - RefSeq Curated (ncbiRefSeqCurated) table - updated Mar 20, 2019"
5 url="H_sapiens_Dec_2013/"
6 foreground="000000"
7 name_size="14"
8 direction_type="arrow"
9 label_field="title"
10 background="FFFFFF"
11 load_hint="Whole Sequence"
12 show2tracks="true"
13 />
14 <file name="H_sapiens_Dec_2013_snp151Common.bed.gz"
15 title="Genetics/Common SNPs (151)"
16 description="Data from UCSC Table Browser - common SNPs (snp151Common table) - updated Mar 20, 2019"
17 url="H_sapiens_Dec_2013"
18 name_size="14"
19 label_field="id"
20 background="FFFFFF"
21 foreground="000000"
22 show2tracks="false"
23 />
24 <file name="H_sapiens_Dec_2013_all_est.psl.gz"
25 title="UCSC Tracks/mRNA and EST/All human EST"
26 description="Data from UCSC Table Browser - human EST alignments (all_est table) - updated Mar 21, 2019"
27 url="H_sapiens_Dec_2013"
28 direction_type="arrow"
29 max_depth="10"
30 name_size="16"
31 background="FFFFFF"
32 foreground="B71725"
33 label_field="id"
34 show2tracks="true"
35 />
36 <file name="H_sapiens_Dec_2013_all_mrna.psl.gz"
37 title="UCSC Tracks/mRNA and EST/Human mRNAs"
38 description="Data from UCSC Table Browser - human mRNA alignments (all_mrna table) - updated Mar 21, 2019"
39 url="H_sapiens_Dec_2013"
40 direction_type="arrow"
41 max_depth="10"
42 name_size="16"
43 background="FFFFFF"
44 foreground="B71725"
45 label_field="id"
46 show2tracks="true"
47 />
48 <file name="UCSCTracks/Assembly.bed.gz"
49 title="UCSC Tracks/Mapping and Sequencing/Assembly"
50 />
51 <file name="UCSCTracks/Hg19_Diff.bed.gz"
52 title="UCSC Tracks/Mapping and Sequencing/Hg19 Diff"
53 />
54 <file name="UCSCTracks/GENCODE.bed.gz"
55 title="UCSC Tracks/Genes and Gene Predictions/GENCODE"
56 />
57 <file name="H_sapiens_Dec_2013_ncbiRefSeq.bed.gz"
58 title="UCSC Tracks/Genes and Gene Predictions/RefSeq All"
59 description="Data from UCSC Table Browser - RefSeq All (ncbiRefSeq table) - updated Mar 20, 2019"
60 url="H_sapiens_Dec_2013"
61 foreground="B71725"
62 name_size="14"
63 direction_type="arrow"
64 label_field="title"
65 background="FFFFFF"
66 show2tracks="true"
67 />
68 <file name="H_sapiens_Dec_2013_refGene.bed.gz"
69 title="UCSC Tracks/Genes and Gene Predictions/RefGene (old)"
70 description="Data from UCSC Genome Browser - RefGene track, downloaded Mar 7, 2014"
71 foreground="000000"
72 name_size="14"
73 direction_type="arrow"
74 label_field="title"
75 background="FFFFFF"
76 />
77 <file name="UCSCTracks/RetroGenes_V9.bed.gz"
78 title="UCSC Tracks/Genes and Gene Predictions/RetroGenes V9"
79 />
80 <file name="UCSCTracks/CpG_Islands.bed.gz"
81 title="UCSC Tracks/Regulation/CpG Islands"
82 />
83 <file name="UCSCTracks/RepeatMasker.bed.gz"
84 title="UCSC Tracks/Repeats/RepeatMasker"
85 />
86 <file name="UCSCTracks/RepeatMasker_Viz.bed.gz"
87 title="UCSC Tracks/Repeats/RepeatMasker Viz"
88 />
89 <file name="cytoBand.cyt"
90 title="Cytobands"
91 load_hint="Whole Sequence"
92 />
93 </files>

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