--- quickload/H_sapiens_Dec_2013/annots.xml	2019/09/10 20:25:45	106
+++ quickload/H_sapiens_Dec_2013/annots.xml	2023/03/06 03:09:32	170
@@ -1,7 +1,7 @@
 <files>
   <file name="H_sapiens_Dec_2013_ncbiRefSeqCurated.bed.gz"
         title="RefSeq Curated"
-        description="Data from UCSC Table Browser - RefSeq Curated (ncbiRefSeqCurated) table - updated Mar 20, 2019"
+        description="Data from UCSC Table Browser - RefSeq Curated (ncbiRefSeqCurated) table - updated Sep 23, 2020"
         url="H_sapiens_Dec_2013/"
         foreground="000000"
         name_size="14"
@@ -10,10 +10,21 @@
         background="FFFFFF"
         load_hint="Whole Sequence"
         show2tracks="true"
-  />
-  <file name="H_sapiens_Dec_2013_snp151Common.bed.gz"
-        title="Genetics/Common SNPs (151)"
-        description="Data from UCSC Table Browser - common SNPs (snp151Common table) - updated Mar 20, 2019"
+   />
+  <file name="chess3.0.GRCh38.p12.bed.gz"
+        title="CHESS gene models v.3.0"
+        description="Based on nearly 10,000 GTEx project RNA-Seq experiments re-formatted for IGB from chess3.0.gff.gz"
+        url="https://github.com/chess-genome/chess"
+        direction_type="arrow"
+        name_size="14"
+        label_field="id"
+        background="FFFFFF"
+        foreground="000000"
+        show2tracks="true"
+   />
+  <file name="H_sapiens_Dec_2013_snp153Common.bed.gz"
+        title="Genetics/Common SNPs (153)"
+        description="Data from UCSC Table Browser - common SNPs (snp153Common table) - updated Sep 30, 2020"
         url="H_sapiens_Dec_2013"
         direction_type="none"
         name_size="14"
@@ -24,7 +35,7 @@
    />
   <file name="H_sapiens_Dec_2013_all_est.psl.gz"
         title="UCSC Tracks/mRNA and EST/All human EST"
-        description="Data from UCSC Table Browser - human EST alignments (all_est table) - updated Mar 21, 2019"
+        description="Data from UCSC Table Browser - human EST alignments (all_est table) - updated Sep 30, 2020"
         url="H_sapiens_Dec_2013"
         direction_type="arrow"
         max_depth="10"
@@ -36,7 +47,7 @@
    />
     <file name="H_sapiens_Dec_2013_all_mrna.psl.gz"
          title="UCSC Tracks/mRNA and EST/Human mRNAs"
-         description="Data from UCSC Table Browser - human mRNA alignments (all_mrna table) - updated Mar 21, 2019"
+         description="Data from UCSC Table Browser - human mRNA alignments (all_mrna table) - updated Sep 30, 2020"
          url="H_sapiens_Dec_2013"
          direction_type="arrow"
          max_depth="10"
@@ -46,6 +57,17 @@
          label_field="id"
          show2tracks="true"
     />
+    <file name="hg38-blacklist.v2.bed.gz" 
+        title="ENCODE blacklist" 
+        description="ENCODE-identified problematic regions of the genome (hg38-blacklist.v2.bed.gz)" 
+        url="https://github.com/Boyle-Lab/Blacklist"
+        direction_type="none"
+        name_size="12"
+        background="FFFFFF"
+        foreground="000000"
+        label_field="name"
+        show2tracks="false"
+    />
    <file name="UCSCTracks/Assembly.bed.gz"
         title="UCSC Tracks/Mapping and Sequencing/Assembly"
 	url="H_sapiens_Dec_2013/UCSCTracks/"
@@ -60,7 +82,7 @@
    />
    <file name="H_sapiens_Dec_2013_ncbiRefSeq.bed.gz"
          title="UCSC Tracks/Genes and Gene Predictions/RefSeq All"
-         description="Data from UCSC Table Browser - RefSeq All (ncbiRefSeq table) - updated Mar 20, 2019"
+         description="Data from UCSC Table Browser - RefSeq All (ncbiRefSeq table) - updated Sep 23, 2020"
          url="H_sapiens_Dec_2013"
          foreground="B71725"
          name_size="14"
@@ -68,11 +90,10 @@
          label_field="title"
          background="FFFFFF"
          show2tracks="true"
-	url="H_sapiens_Dec_2013/UCSCTracks/"
    />
    <file name="H_sapiens_Dec_2013_refGene.bed.gz"
         title="UCSC Tracks/Genes and Gene Predictions/RefGene (old)"
-        description="Data from UCSC Genome Browser - RefGene track, downloaded Mar 7, 2014"
+        description="Data from UCSC Genome Browser - RefGene track, updated Sep 30, 2020"
         foreground="000000"
         name_size="14"
         direction_type="arrow"
@@ -89,7 +110,6 @@
 	url="H_sapiens_Dec_2013/UCSCTracks/"
    />
    <file name="UCSCTracks/RepeatMasker.bed.gz"
-   <file name="UCSCTracks/RepeatMasker.bed.gz"
         title="UCSC Tracks/Repeats/RepeatMasker"
 	url="H_sapiens_Dec_2013/UCSCTracks/"
    />