/[genomes]/quickload/H_sapiens_Dec_2013/annots.xml
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revision 113 by aloraine, Wed Sep 11 17:48:24 2019 UTC revision 158 by nfreese, Wed Sep 22 20:46:16 2021 UTC
# Line 1  Line 1 
1  <files>  <files>
2    <file name="H_sapiens_Dec_2013_ncbiRefSeqCurated.bed.gz"    <file name="H_sapiens_Dec_2013_ncbiRefSeqCurated.bed.gz"
3          title="RefSeq Curated"          title="RefSeq Curated"
4          description="Data from UCSC Table Browser - RefSeq Curated (ncbiRefSeqCurated) table - updated Mar 20, 2019"          description="Data from UCSC Table Browser - RefSeq Curated (ncbiRefSeqCurated) table - updated Sep 23, 2020"
5          url="H_sapiens_Dec_2013/"          url="H_sapiens_Dec_2013/"
6          foreground="000000"          foreground="000000"
7          name_size="14"          name_size="14"
# Line 11  Line 11 
11          load_hint="Whole Sequence"          load_hint="Whole Sequence"
12          show2tracks="true"          show2tracks="true"
13    />    />
14    <file name="H_sapiens_Dec_2013_snp151Common.bed.gz"    <file name="H_sapiens_Dec_2013_snp153Common.bed.gz"
15          title="Genetics/Common SNPs (151)"          title="Genetics/Common SNPs (153)"
16          description="Data from UCSC Table Browser - common SNPs (snp151Common table) - updated Mar 20, 2019"          description="Data from UCSC Table Browser - common SNPs (snp153Common table) - updated Sep 30, 2020"
17          url="H_sapiens_Dec_2013"          url="H_sapiens_Dec_2013"
18          direction_type="none"          direction_type="none"
19          name_size="14"          name_size="14"
# Line 24  Line 24 
24     />     />
25    <file name="H_sapiens_Dec_2013_all_est.psl.gz"    <file name="H_sapiens_Dec_2013_all_est.psl.gz"
26          title="UCSC Tracks/mRNA and EST/All human EST"          title="UCSC Tracks/mRNA and EST/All human EST"
27          description="Data from UCSC Table Browser - human EST alignments (all_est table) - updated Mar 21, 2019"          description="Data from UCSC Table Browser - human EST alignments (all_est table) - updated Sep 30, 2020"
28          url="H_sapiens_Dec_2013"          url="H_sapiens_Dec_2013"
29          direction_type="arrow"          direction_type="arrow"
30          max_depth="10"          max_depth="10"
# Line 36  Line 36 
36     />     />
37      <file name="H_sapiens_Dec_2013_all_mrna.psl.gz"      <file name="H_sapiens_Dec_2013_all_mrna.psl.gz"
38           title="UCSC Tracks/mRNA and EST/Human mRNAs"           title="UCSC Tracks/mRNA and EST/Human mRNAs"
39           description="Data from UCSC Table Browser - human mRNA alignments (all_mrna table) - updated Mar 21, 2019"           description="Data from UCSC Table Browser - human mRNA alignments (all_mrna table) - updated Sep 30, 2020"
40           url="H_sapiens_Dec_2013"           url="H_sapiens_Dec_2013"
41           direction_type="arrow"           direction_type="arrow"
42           max_depth="10"           max_depth="10"
# Line 46  Line 46 
46           label_field="id"           label_field="id"
47           show2tracks="true"           show2tracks="true"
48      />      />
49        <file name="hg38-blacklist.v2.bed.gz"
50            title="ENCODE blacklist"
51            description="ENCODE-identified problematic regions of the genome (hg38-blacklist.v2.bed.gz)"
52            url="https://github.com/Boyle-Lab/Blacklist"
53            direction_type="none"
54            name_size="12"
55            background="FFFFFF"
56            foreground="000000"
57            label_field="name"
58            show2tracks="false"
59        />
60     <file name="UCSCTracks/Assembly.bed.gz"     <file name="UCSCTracks/Assembly.bed.gz"
61          title="UCSC Tracks/Mapping and Sequencing/Assembly"          title="UCSC Tracks/Mapping and Sequencing/Assembly"
62          url="H_sapiens_Dec_2013/UCSCTracks/"          url="H_sapiens_Dec_2013/UCSCTracks/"
# Line 60  Line 71 
71     />     />
72     <file name="H_sapiens_Dec_2013_ncbiRefSeq.bed.gz"     <file name="H_sapiens_Dec_2013_ncbiRefSeq.bed.gz"
73           title="UCSC Tracks/Genes and Gene Predictions/RefSeq All"           title="UCSC Tracks/Genes and Gene Predictions/RefSeq All"
74           description="Data from UCSC Table Browser - RefSeq All (ncbiRefSeq table) - updated Mar 20, 2019"           description="Data from UCSC Table Browser - RefSeq All (ncbiRefSeq table) - updated Sep 23, 2020"
75           url="H_sapiens_Dec_2013"           url="H_sapiens_Dec_2013"
76           foreground="B71725"           foreground="B71725"
77           name_size="14"           name_size="14"
# Line 71  Line 82 
82     />     />
83     <file name="H_sapiens_Dec_2013_refGene.bed.gz"     <file name="H_sapiens_Dec_2013_refGene.bed.gz"
84          title="UCSC Tracks/Genes and Gene Predictions/RefGene (old)"          title="UCSC Tracks/Genes and Gene Predictions/RefGene (old)"
85          description="Data from UCSC Genome Browser - RefGene track, downloaded Mar 7, 2014"          description="Data from UCSC Genome Browser - RefGene track, updated Sep 30, 2020"
86          foreground="000000"          foreground="000000"
87          name_size="14"          name_size="14"
88          direction_type="arrow"          direction_type="arrow"
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