/[genomes]/quickload/H_sapiens_Dec_2013/annots.xml
ViewVC logotype

Diff of /quickload/H_sapiens_Dec_2013/annots.xml

Parent Directory Parent Directory | Revision Log Revision Log | View Patch Patch

revision 9 by aloraine, Wed Sep 26 22:18:04 2018 UTC revision 158 by nfreese, Wed Sep 22 20:46:16 2021 UTC
# Line 1  Line 1 
1  <files>  <files>
2    <file name="cytoBand.cyt"    <file name="H_sapiens_Dec_2013_ncbiRefSeqCurated.bed.gz"
3          title="Cytobands"          title="RefSeq Curated"
4          load_hint="Whole Sequence"          description="Data from UCSC Table Browser - RefSeq Curated (ncbiRefSeqCurated) table - updated Sep 23, 2020"
   />  
   <file name="H_sapiens_Dec_2013_refGene.bed.gz"  
         title="RefGene"  
         description="UCSC RefGene track (Mar 7, 2014)"  
5          url="H_sapiens_Dec_2013/"          url="H_sapiens_Dec_2013/"
6          foreground="000000"          foreground="000000"
7          name_size="14"          name_size="14"
# Line 13  Line 9 
9          label_field="title"          label_field="title"
10          background="FFFFFF"          background="FFFFFF"
11          load_hint="Whole Sequence"          load_hint="Whole Sequence"
12      show2tracks="true"          show2tracks="true"
13    />    />
14    <file name="H_sapiens_Dec_2013_all_mrna.psl.gz"    <file name="H_sapiens_Dec_2013_snp153Common.bed.gz"
15          title="mRNA"          title="Genetics/Common SNPs (153)"
16          description="UCSC all mRNA track (Mar 7, 2014)"          description="Data from UCSC Table Browser - common SNPs (snp153Common table) - updated Sep 30, 2020"
17          url="H_sapiens_Dec_2013/"          url="H_sapiens_Dec_2013"
18          max_depth="10"          direction_type="none"
19          background="FFFFFF"          name_size="14"
         foreground="B71725"  
         name_size="16"  
20          label_field="id"          label_field="id"
21      show2tracks="false"/>          background="FFFFFF"
22            foreground="1B4C9B"
23            show2tracks="false"
24       />
25    <file name="H_sapiens_Dec_2013_all_est.psl.gz"    <file name="H_sapiens_Dec_2013_all_est.psl.gz"
26          title="EST"          title="UCSC Tracks/mRNA and EST/All human EST"
27          description="UCSC all EST track (Mar 7, 2014)"          description="Data from UCSC Table Browser - human EST alignments (all_est table) - updated Sep 30, 2020"
28          url="H_sapiens_Dec_2013/"          url="H_sapiens_Dec_2013"
29          direction_type="arrow"          direction_type="arrow"
30          max_depth="10"          max_depth="10"
31          name_size="16"          name_size="16"
32          background="FFFFFF"          background="FFFFFF"
33          foreground="B71725"          foreground="B71725"
34          label_field="id"          label_field="id"
35      show2tracks="false"/>          show2tracks="true"
36       />
37        <file name="H_sapiens_Dec_2013_all_mrna.psl.gz"
38             title="UCSC Tracks/mRNA and EST/Human mRNAs"
39             description="Data from UCSC Table Browser - human mRNA alignments (all_mrna table) - updated Sep 30, 2020"
40             url="H_sapiens_Dec_2013"
41             direction_type="arrow"
42             max_depth="10"
43             name_size="16"
44             background="FFFFFF"
45             foreground="B71725"
46             label_field="id"
47             show2tracks="true"
48        />
49        <file name="hg38-blacklist.v2.bed.gz"
50            title="ENCODE blacklist"
51            description="ENCODE-identified problematic regions of the genome (hg38-blacklist.v2.bed.gz)"
52            url="https://github.com/Boyle-Lab/Blacklist"
53            direction_type="none"
54            name_size="12"
55            background="FFFFFF"
56            foreground="000000"
57            label_field="name"
58            show2tracks="false"
59        />
60     <file name="UCSCTracks/Assembly.bed.gz"     <file name="UCSCTracks/Assembly.bed.gz"
61          title="UCSCTracks/Mapping and Sequencing/Assembly"          title="UCSC Tracks/Mapping and Sequencing/Assembly"
62            url="H_sapiens_Dec_2013/UCSCTracks/"
63     />     />
64     <file name="UCSCTracks/Hg19_Diff.bed.gz"     <file name="UCSCTracks/Hg19_Diff.bed.gz"
65          title="UCSCTracks/Mapping and Sequencing/Hg19 Diff"          title="UCSC Tracks/Mapping and Sequencing/Hg19 Diff"
66            url="H_sapiens_Dec_2013/UCSCTracks/"
67     />     />
68     <file name="UCSCTracks/GENCODE.bed.gz"     <file name="UCSCTracks/GENCODE.bed.gz"
69          title="UCSCTracks/Genes and Gene Predictions/GENCODE"          title="UCSC Tracks/Genes and Gene Predictions/GENCODE"
70     />          url="H_sapiens_Dec_2013/UCSCTracks/"
    <file name="UCSCTracks/RetroGenes_V9.bed.gz"  
         title="UCSCTracks/Genes and Gene Predictions/RetroGenes V9"  
71     />     />
72     <file name="UCSCTracks/Human_mRNAs.bed.gz"     <file name="H_sapiens_Dec_2013_ncbiRefSeq.bed.gz"
73          title="UCSCTracks/mRNA and EST/Human mRNAs"           title="UCSC Tracks/Genes and Gene Predictions/RefSeq All"
74             description="Data from UCSC Table Browser - RefSeq All (ncbiRefSeq table) - updated Sep 23, 2020"
75             url="H_sapiens_Dec_2013"
76             foreground="B71725"
77             name_size="14"
78             direction_type="arrow"
79             label_field="title"
80             background="FFFFFF"
81             show2tracks="true"
82       />
83       <file name="H_sapiens_Dec_2013_refGene.bed.gz"
84            title="UCSC Tracks/Genes and Gene Predictions/RefGene (old)"
85            description="Data from UCSC Genome Browser - RefGene track, updated Sep 30, 2020"
86            foreground="000000"
87            name_size="14"
88            direction_type="arrow"
89            label_field="title"
90            background="FFFFFF"
91            url="H_sapiens_Dec_2013/UCSCTracks/"
92     />     />
93     <file name="UCSCTracks/Spliced_ESTs.bed.gz"     <file name="UCSCTracks/RetroGenes_V9.bed.gz"
94          title="UCSCTracks/mRNA and EST/Spliced ESTs"          title="UCSC Tracks/Genes and Gene Predictions/RetroGenes V9"
95            url="H_sapiens_Dec_2013/UCSCTracks/"
96     />     />
97     <file name="UCSCTracks/CpG_Islands.bed.gz"     <file name="UCSCTracks/CpG_Islands.bed.gz"
98          title="UCSCTracks/Regulation/CpG Islands"          title="UCSC Tracks/Regulation/CpG Islands"
99     />          url="H_sapiens_Dec_2013/UCSCTracks/"
    <file name="UCSCTracks/Common_SNPs(142).bed.gz"  
         title="UCSCTracks/Variation/Common SNPs(142)"  
100     />     />
101     <file name="UCSCTracks/RepeatMasker.bed.gz"     <file name="UCSCTracks/RepeatMasker.bed.gz"
102          title="UCSCTracks/Repeats/RepeatMasker"          title="UCSC Tracks/Repeats/RepeatMasker"
103            url="H_sapiens_Dec_2013/UCSCTracks/"
104     />     />
105     <file name="UCSCTracks/RepeatMasker_Viz.bed.gz"     <file name="UCSCTracks/RepeatMasker_Viz.bed.gz"
106          title="UCSCTracks/Repeats/RepeatMasker Viz"          title="UCSC Tracks/Repeats/RepeatMasker Viz"
107            url="H_sapiens_Dec_2013/UCSCTracks/"
108       />
109       <file name="cytoBand.cyt"
110             title="Cytobands"
111             load_hint="Whole Sequence"
112     />     />
113  </files>  </files>
Legend:
Removed from v.9  
changed lines
  Added in v.158
  ViewVC Help
Powered by ViewVC 1.1.26