/[genomes]/quickload/H_sapiens_Dec_2013/annots.xml
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revision 98 by aloraine, Sun Mar 24 18:28:56 2019 UTC revision 158 by nfreese, Wed Sep 22 20:46:16 2021 UTC
# Line 1  Line 1 
1  <files>  <files>
2    <file name="H_sapiens_Dec_2013_ncbiRefSeqCurated.bed.gz"    <file name="H_sapiens_Dec_2013_ncbiRefSeqCurated.bed.gz"
3          title="RefSeq Curated"          title="RefSeq Curated"
4          description="Data from UCSC Table Browser - RefSeq Curated (ncbiRefSeqCurated) table - updated Mar 20, 2019"          description="Data from UCSC Table Browser - RefSeq Curated (ncbiRefSeqCurated) table - updated Sep 23, 2020"
5          url="H_sapiens_Dec_2013/"          url="H_sapiens_Dec_2013/"
6          foreground="000000"          foreground="000000"
7          name_size="14"          name_size="14"
# Line 11  Line 11 
11          load_hint="Whole Sequence"          load_hint="Whole Sequence"
12          show2tracks="true"          show2tracks="true"
13    />    />
14    <file name="H_sapiens_Dec_2013_snp151Common.bed.gz"    <file name="H_sapiens_Dec_2013_snp153Common.bed.gz"
15          title="Genetics/Common SNPs (151)"          title="Genetics/Common SNPs (153)"
16          description="Data from UCSC Table Browser - common SNPs (snp151Common table) - updated Mar 20, 2019"          description="Data from UCSC Table Browser - common SNPs (snp153Common table) - updated Sep 30, 2020"
17          url="H_sapiens_Dec_2013"          url="H_sapiens_Dec_2013"
18            direction_type="none"
19          name_size="14"          name_size="14"
20          label_field="id"          label_field="id"
21          background="FFFFFF"          background="FFFFFF"
22          foreground="000000"          foreground="1B4C9B"
23          show2tracks="false"          show2tracks="false"
24     />     />
   <file name="H_sapiens_Dec_2013_ncbiRefSeq.bed.gz"  
         title="UCSC Tracks/mRNA and EST/RefSeq All"  
         description="Data from UCSC Table Browser - RefSeq All (ncbiRefSeq table) - updated Mar 20, 2019"  
         url="H_sapiens_Dec_2013"  
         foreground="B71725"  
         name_size="14"  
         direction_type="arrow"  
         label_field="title"  
         background="FFFFFF"  
         show2tracks="true"  
   />  
25    <file name="H_sapiens_Dec_2013_all_est.psl.gz"    <file name="H_sapiens_Dec_2013_all_est.psl.gz"
26          title="UCSC Tracks/mRNA and EST/All human EST"          title="UCSC Tracks/mRNA and EST/All human EST"
27          description="Data from UCSC Table Browser - human EST alignments (all_est table) - updated Mar 21, 2019"          description="Data from UCSC Table Browser - human EST alignments (all_est table) - updated Sep 30, 2020"
28          url="H_sapiens_Dec_2013"          url="H_sapiens_Dec_2013"
29          direction_type="arrow"          direction_type="arrow"
30          max_depth="10"          max_depth="10"
# Line 46  Line 36 
36     />     />
37      <file name="H_sapiens_Dec_2013_all_mrna.psl.gz"      <file name="H_sapiens_Dec_2013_all_mrna.psl.gz"
38           title="UCSC Tracks/mRNA and EST/Human mRNAs"           title="UCSC Tracks/mRNA and EST/Human mRNAs"
39           description="Data from UCSC Table Browser - human mRNA alignments (all_mrna table) - updated Mar 21, 2019"           description="Data from UCSC Table Browser - human mRNA alignments (all_mrna table) - updated Sep 30, 2020"
40           url="H_sapiens_Dec_2013"           url="H_sapiens_Dec_2013"
41           direction_type="arrow"           direction_type="arrow"
42           max_depth="10"           max_depth="10"
# Line 56  Line 46 
46           label_field="id"           label_field="id"
47           show2tracks="true"           show2tracks="true"
48      />      />
49        <file name="hg38-blacklist.v2.bed.gz"
50            title="ENCODE blacklist"
51            description="ENCODE-identified problematic regions of the genome (hg38-blacklist.v2.bed.gz)"
52            url="https://github.com/Boyle-Lab/Blacklist"
53            direction_type="none"
54            name_size="12"
55            background="FFFFFF"
56            foreground="000000"
57            label_field="name"
58            show2tracks="false"
59        />
60     <file name="UCSCTracks/Assembly.bed.gz"     <file name="UCSCTracks/Assembly.bed.gz"
61          title="UCSC Tracks/Mapping and Sequencing/Assembly"          title="UCSC Tracks/Mapping and Sequencing/Assembly"
62            url="H_sapiens_Dec_2013/UCSCTracks/"
63     />     />
64     <file name="UCSCTracks/Hg19_Diff.bed.gz"     <file name="UCSCTracks/Hg19_Diff.bed.gz"
65          title="UCSC Tracks/Mapping and Sequencing/Hg19 Diff"          title="UCSC Tracks/Mapping and Sequencing/Hg19 Diff"
66            url="H_sapiens_Dec_2013/UCSCTracks/"
67     />     />
68     <file name="UCSCTracks/GENCODE.bed.gz"     <file name="UCSCTracks/GENCODE.bed.gz"
69          title="UCSC Tracks/Genes and Gene Predictions/GENCODE"          title="UCSC Tracks/Genes and Gene Predictions/GENCODE"
70            url="H_sapiens_Dec_2013/UCSCTracks/"
71       />
72       <file name="H_sapiens_Dec_2013_ncbiRefSeq.bed.gz"
73             title="UCSC Tracks/Genes and Gene Predictions/RefSeq All"
74             description="Data from UCSC Table Browser - RefSeq All (ncbiRefSeq table) - updated Sep 23, 2020"
75             url="H_sapiens_Dec_2013"
76             foreground="B71725"
77             name_size="14"
78             direction_type="arrow"
79             label_field="title"
80             background="FFFFFF"
81             show2tracks="true"
82     />     />
83     <file name="H_sapiens_Dec_2013_refGene.bed.gz"     <file name="H_sapiens_Dec_2013_refGene.bed.gz"
84          title="UCSC Tracks/Genes and Gene Predictions/RefGene (old)"          title="UCSC Tracks/Genes and Gene Predictions/RefGene (old)"
85          description="Data from UCSC Genome Browser - RefGene track, downloaded Mar 7, 2014"          description="Data from UCSC Genome Browser - RefGene track, updated Sep 30, 2020"
86          foreground="000000"          foreground="000000"
87          name_size="14"          name_size="14"
88          direction_type="arrow"          direction_type="arrow"
89          label_field="title"          label_field="title"
90          background="FFFFFF"          background="FFFFFF"
91            url="H_sapiens_Dec_2013/UCSCTracks/"
92     />     />
93     <file name="UCSCTracks/RetroGenes_V9.bed.gz"     <file name="UCSCTracks/RetroGenes_V9.bed.gz"
94          title="UCSC Tracks/Genes and Gene Predictions/RetroGenes V9"          title="UCSC Tracks/Genes and Gene Predictions/RetroGenes V9"
95            url="H_sapiens_Dec_2013/UCSCTracks/"
96     />     />
97     <file name="UCSCTracks/CpG_Islands.bed.gz"     <file name="UCSCTracks/CpG_Islands.bed.gz"
98          title="UCSC Tracks/Regulation/CpG Islands"          title="UCSC Tracks/Regulation/CpG Islands"
99            url="H_sapiens_Dec_2013/UCSCTracks/"
100     />     />
101     <file name="UCSCTracks/RepeatMasker.bed.gz"     <file name="UCSCTracks/RepeatMasker.bed.gz"
102          title="UCSC Tracks/Repeats/RepeatMasker"          title="UCSC Tracks/Repeats/RepeatMasker"
103            url="H_sapiens_Dec_2013/UCSCTracks/"
104     />     />
105     <file name="UCSCTracks/RepeatMasker_Viz.bed.gz"     <file name="UCSCTracks/RepeatMasker_Viz.bed.gz"
106          title="UCSC Tracks/Repeats/RepeatMasker Viz"          title="UCSC Tracks/Repeats/RepeatMasker Viz"
107            url="H_sapiens_Dec_2013/UCSCTracks/"
108     />     />
109     <file name="cytoBand.cyt"     <file name="cytoBand.cyt"
110           title="Cytobands"           title="Cytobands"
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