/[genomes]/quickload/H_sapiens_Dec_2013/annots.xml
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revision 9 by aloraine, Wed Sep 26 22:18:04 2018 UTC revision 99 by aloraine, Sun Mar 24 18:37:02 2019 UTC
# Line 1  Line 1 
1  <files>  <files>
2    <file name="cytoBand.cyt"    <file name="H_sapiens_Dec_2013_ncbiRefSeqCurated.bed.gz"
3          title="Cytobands"          title="RefSeq Curated"
4          load_hint="Whole Sequence"          description="Data from UCSC Table Browser - RefSeq Curated (ncbiRefSeqCurated) table - updated Mar 20, 2019"
   />  
   <file name="H_sapiens_Dec_2013_refGene.bed.gz"  
         title="RefGene"  
         description="UCSC RefGene track (Mar 7, 2014)"  
5          url="H_sapiens_Dec_2013/"          url="H_sapiens_Dec_2013/"
6          foreground="000000"          foreground="000000"
7          name_size="14"          name_size="14"
# Line 13  Line 9 
9          label_field="title"          label_field="title"
10          background="FFFFFF"          background="FFFFFF"
11          load_hint="Whole Sequence"          load_hint="Whole Sequence"
12      show2tracks="true"          show2tracks="true"
13    />    />
14    <file name="H_sapiens_Dec_2013_all_mrna.psl.gz"    <file name="H_sapiens_Dec_2013_snp151Common.bed.gz"
15          title="mRNA"          title="Genetics/Common SNPs (151)"
16          description="UCSC all mRNA track (Mar 7, 2014)"          description="Data from UCSC Table Browser - common SNPs (snp151Common table) - updated Mar 20, 2019"
17          url="H_sapiens_Dec_2013/"          url="H_sapiens_Dec_2013"
18          max_depth="10"          name_size="14"
         background="FFFFFF"  
         foreground="B71725"  
         name_size="16"  
19          label_field="id"          label_field="id"
20      show2tracks="false"/>          background="FFFFFF"
21            foreground="000000"
22            show2tracks="false"
23       />
24    <file name="H_sapiens_Dec_2013_all_est.psl.gz"    <file name="H_sapiens_Dec_2013_all_est.psl.gz"
25          title="EST"          title="UCSC Tracks/mRNA and EST/All human EST"
26          description="UCSC all EST track (Mar 7, 2014)"          description="Data from UCSC Table Browser - human EST alignments (all_est table) - updated Mar 21, 2019"
27          url="H_sapiens_Dec_2013/"          url="H_sapiens_Dec_2013"
28          direction_type="arrow"          direction_type="arrow"
29          max_depth="10"          max_depth="10"
30          name_size="16"          name_size="16"
31          background="FFFFFF"          background="FFFFFF"
32          foreground="B71725"          foreground="B71725"
33          label_field="id"          label_field="id"
34      show2tracks="false"/>          show2tracks="true"
35       />
36        <file name="H_sapiens_Dec_2013_all_mrna.psl.gz"
37             title="UCSC Tracks/mRNA and EST/Human mRNAs"
38             description="Data from UCSC Table Browser - human mRNA alignments (all_mrna table) - updated Mar 21, 2019"
39             url="H_sapiens_Dec_2013"
40             direction_type="arrow"
41             max_depth="10"
42             name_size="16"
43             background="FFFFFF"
44             foreground="B71725"
45             label_field="id"
46             show2tracks="true"
47        />
48     <file name="UCSCTracks/Assembly.bed.gz"     <file name="UCSCTracks/Assembly.bed.gz"
49          title="UCSCTracks/Mapping and Sequencing/Assembly"          title="UCSC Tracks/Mapping and Sequencing/Assembly"
50     />     />
51     <file name="UCSCTracks/Hg19_Diff.bed.gz"     <file name="UCSCTracks/Hg19_Diff.bed.gz"
52          title="UCSCTracks/Mapping and Sequencing/Hg19 Diff"          title="UCSC Tracks/Mapping and Sequencing/Hg19 Diff"
53     />     />
54     <file name="UCSCTracks/GENCODE.bed.gz"     <file name="UCSCTracks/GENCODE.bed.gz"
55          title="UCSCTracks/Genes and Gene Predictions/GENCODE"          title="UCSC Tracks/Genes and Gene Predictions/GENCODE"
    />  
    <file name="UCSCTracks/RetroGenes_V9.bed.gz"  
         title="UCSCTracks/Genes and Gene Predictions/RetroGenes V9"  
56     />     />
57     <file name="UCSCTracks/Human_mRNAs.bed.gz"     <file name="H_sapiens_Dec_2013_ncbiRefSeq.bed.gz"
58          title="UCSCTracks/mRNA and EST/Human mRNAs"           title="UCSC Tracks/Genes and Gene Predictions/RefSeq All"
59             description="Data from UCSC Table Browser - RefSeq All (ncbiRefSeq table) - updated Mar 20, 2019"
60             url="H_sapiens_Dec_2013"
61             foreground="B71725"
62             name_size="14"
63             direction_type="arrow"
64             label_field="title"
65             background="FFFFFF"
66             show2tracks="true"
67       />
68       <file name="H_sapiens_Dec_2013_refGene.bed.gz"
69            title="UCSC Tracks/Genes and Gene Predictions/RefGene (old)"
70            description="Data from UCSC Genome Browser - RefGene track, downloaded Mar 7, 2014"
71            foreground="000000"
72            name_size="14"
73            direction_type="arrow"
74            label_field="title"
75            background="FFFFFF"
76     />     />
77     <file name="UCSCTracks/Spliced_ESTs.bed.gz"     <file name="UCSCTracks/RetroGenes_V9.bed.gz"
78          title="UCSCTracks/mRNA and EST/Spliced ESTs"          title="UCSC Tracks/Genes and Gene Predictions/RetroGenes V9"
79     />     />
80     <file name="UCSCTracks/CpG_Islands.bed.gz"     <file name="UCSCTracks/CpG_Islands.bed.gz"
81          title="UCSCTracks/Regulation/CpG Islands"          title="UCSC Tracks/Regulation/CpG Islands"
    />  
    <file name="UCSCTracks/Common_SNPs(142).bed.gz"  
         title="UCSCTracks/Variation/Common SNPs(142)"  
82     />     />
83     <file name="UCSCTracks/RepeatMasker.bed.gz"     <file name="UCSCTracks/RepeatMasker.bed.gz"
84          title="UCSCTracks/Repeats/RepeatMasker"          title="UCSC Tracks/Repeats/RepeatMasker"
85     />     />
86     <file name="UCSCTracks/RepeatMasker_Viz.bed.gz"     <file name="UCSCTracks/RepeatMasker_Viz.bed.gz"
87          title="UCSCTracks/Repeats/RepeatMasker Viz"          title="UCSC Tracks/Repeats/RepeatMasker Viz"
88       />
89       <file name="cytoBand.cyt"
90             title="Cytobands"
91             load_hint="Whole Sequence"
92     />     />
93  </files>  </files>
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