/[genomes]/quickload/H_sapiens_Dec_2013/annots.xml
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revision 9 by aloraine, Wed Sep 26 22:18:04 2018 UTC revision 131 by nfreese, Fri Oct 2 17:22:03 2020 UTC
# Line 1  Line 1 
1  <files>  <files>
2    <file name="cytoBand.cyt"    <file name="H_sapiens_Dec_2013_ncbiRefSeqCurated.bed.gz"
3          title="Cytobands"          title="RefSeq Curated"
4          load_hint="Whole Sequence"          description="Data from UCSC Table Browser - RefSeq Curated (ncbiRefSeqCurated) table - updated Sep 23, 2020"
   />  
   <file name="H_sapiens_Dec_2013_refGene.bed.gz"  
         title="RefGene"  
         description="UCSC RefGene track (Mar 7, 2014)"  
5          url="H_sapiens_Dec_2013/"          url="H_sapiens_Dec_2013/"
6          foreground="000000"          foreground="000000"
7          name_size="14"          name_size="14"
# Line 13  Line 9 
9          label_field="title"          label_field="title"
10          background="FFFFFF"          background="FFFFFF"
11          load_hint="Whole Sequence"          load_hint="Whole Sequence"
12      show2tracks="true"          show2tracks="true"
13    />    />
14    <file name="H_sapiens_Dec_2013_all_mrna.psl.gz"    <file name="H_sapiens_Dec_2013_snp153Common.bed.gz"
15          title="mRNA"          title="Genetics/Common SNPs (153)"
16          description="UCSC all mRNA track (Mar 7, 2014)"          description="Data from UCSC Table Browser - common SNPs (snp153Common table) - updated Sep 30, 2020"
17          url="H_sapiens_Dec_2013/"          url="H_sapiens_Dec_2013"
18          max_depth="10"          direction_type="none"
19          background="FFFFFF"          name_size="14"
         foreground="B71725"  
         name_size="16"  
20          label_field="id"          label_field="id"
21      show2tracks="false"/>          background="FFFFFF"
22            foreground="1B4C9B"
23            show2tracks="false"
24       />
25    <file name="H_sapiens_Dec_2013_all_est.psl.gz"    <file name="H_sapiens_Dec_2013_all_est.psl.gz"
26          title="EST"          title="UCSC Tracks/mRNA and EST/All human EST"
27          description="UCSC all EST track (Mar 7, 2014)"          description="Data from UCSC Table Browser - human EST alignments (all_est table) - updated Sep 30, 2020"
28          url="H_sapiens_Dec_2013/"          url="H_sapiens_Dec_2013"
29          direction_type="arrow"          direction_type="arrow"
30          max_depth="10"          max_depth="10"
31          name_size="16"          name_size="16"
32          background="FFFFFF"          background="FFFFFF"
33          foreground="B71725"          foreground="B71725"
34          label_field="id"          label_field="id"
35      show2tracks="false"/>          show2tracks="true"
36       />
37        <file name="H_sapiens_Dec_2013_all_mrna.psl.gz"
38             title="UCSC Tracks/mRNA and EST/Human mRNAs"
39             description="Data from UCSC Table Browser - human mRNA alignments (all_mrna table) - updated Sep 30, 2020"
40             url="H_sapiens_Dec_2013"
41             direction_type="arrow"
42             max_depth="10"
43             name_size="16"
44             background="FFFFFF"
45             foreground="B71725"
46             label_field="id"
47             show2tracks="true"
48        />
49     <file name="UCSCTracks/Assembly.bed.gz"     <file name="UCSCTracks/Assembly.bed.gz"
50          title="UCSCTracks/Mapping and Sequencing/Assembly"          title="UCSC Tracks/Mapping and Sequencing/Assembly"
51            url="H_sapiens_Dec_2013/UCSCTracks/"
52     />     />
53     <file name="UCSCTracks/Hg19_Diff.bed.gz"     <file name="UCSCTracks/Hg19_Diff.bed.gz"
54          title="UCSCTracks/Mapping and Sequencing/Hg19 Diff"          title="UCSC Tracks/Mapping and Sequencing/Hg19 Diff"
55            url="H_sapiens_Dec_2013/UCSCTracks/"
56     />     />
57     <file name="UCSCTracks/GENCODE.bed.gz"     <file name="UCSCTracks/GENCODE.bed.gz"
58          title="UCSCTracks/Genes and Gene Predictions/GENCODE"          title="UCSC Tracks/Genes and Gene Predictions/GENCODE"
59     />          url="H_sapiens_Dec_2013/UCSCTracks/"
    <file name="UCSCTracks/RetroGenes_V9.bed.gz"  
         title="UCSCTracks/Genes and Gene Predictions/RetroGenes V9"  
60     />     />
61     <file name="UCSCTracks/Human_mRNAs.bed.gz"     <file name="H_sapiens_Dec_2013_ncbiRefSeq.bed.gz"
62          title="UCSCTracks/mRNA and EST/Human mRNAs"           title="UCSC Tracks/Genes and Gene Predictions/RefSeq All"
63             description="Data from UCSC Table Browser - RefSeq All (ncbiRefSeq table) - updated Sep 23, 2020"
64             url="H_sapiens_Dec_2013"
65             foreground="B71725"
66             name_size="14"
67             direction_type="arrow"
68             label_field="title"
69             background="FFFFFF"
70             show2tracks="true"
71       />
72       <file name="H_sapiens_Dec_2013_refGene.bed.gz"
73            title="UCSC Tracks/Genes and Gene Predictions/RefGene (old)"
74            description="Data from UCSC Genome Browser - RefGene track, updated Sep 30, 2020"
75            foreground="000000"
76            name_size="14"
77            direction_type="arrow"
78            label_field="title"
79            background="FFFFFF"
80            url="H_sapiens_Dec_2013/UCSCTracks/"
81     />     />
82     <file name="UCSCTracks/Spliced_ESTs.bed.gz"     <file name="UCSCTracks/RetroGenes_V9.bed.gz"
83          title="UCSCTracks/mRNA and EST/Spliced ESTs"          title="UCSC Tracks/Genes and Gene Predictions/RetroGenes V9"
84            url="H_sapiens_Dec_2013/UCSCTracks/"
85     />     />
86     <file name="UCSCTracks/CpG_Islands.bed.gz"     <file name="UCSCTracks/CpG_Islands.bed.gz"
87          title="UCSCTracks/Regulation/CpG Islands"          title="UCSC Tracks/Regulation/CpG Islands"
88     />          url="H_sapiens_Dec_2013/UCSCTracks/"
    <file name="UCSCTracks/Common_SNPs(142).bed.gz"  
         title="UCSCTracks/Variation/Common SNPs(142)"  
89     />     />
90     <file name="UCSCTracks/RepeatMasker.bed.gz"     <file name="UCSCTracks/RepeatMasker.bed.gz"
91          title="UCSCTracks/Repeats/RepeatMasker"          title="UCSC Tracks/Repeats/RepeatMasker"
92            url="H_sapiens_Dec_2013/UCSCTracks/"
93     />     />
94     <file name="UCSCTracks/RepeatMasker_Viz.bed.gz"     <file name="UCSCTracks/RepeatMasker_Viz.bed.gz"
95          title="UCSCTracks/Repeats/RepeatMasker Viz"          title="UCSC Tracks/Repeats/RepeatMasker Viz"
96            url="H_sapiens_Dec_2013/UCSCTracks/"
97       />
98       <file name="cytoBand.cyt"
99             title="Cytobands"
100             load_hint="Whole Sequence"
101     />     />
102  </files>  </files>
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