/[genomes]/quickload/H_sapiens_Dec_2013/annots.xml
ViewVC logotype

Annotation of /quickload/H_sapiens_Dec_2013/annots.xml

Parent Directory Parent Directory | Revision Log Revision Log


Revision 158 - (hide annotations)
Wed Sep 22 20:46:16 2021 UTC (10 months, 3 weeks ago) by nfreese
File MIME type: text/xml
File size: 4131 byte(s)
IGBF-2696;Add hg38 ENCODE blacklist v2;Sep 22, 2021
1 aloraine 9 <files>
2 aloraine 96 <file name="H_sapiens_Dec_2013_ncbiRefSeqCurated.bed.gz"
3     title="RefSeq Curated"
4 nfreese 131 description="Data from UCSC Table Browser - RefSeq Curated (ncbiRefSeqCurated) table - updated Sep 23, 2020"
5 aloraine 9 url="H_sapiens_Dec_2013/"
6     foreground="000000"
7     name_size="14"
8     direction_type="arrow"
9     label_field="title"
10     background="FFFFFF"
11     load_hint="Whole Sequence"
12 aloraine 96 show2tracks="true"
13 aloraine 9 />
14 nfreese 131 <file name="H_sapiens_Dec_2013_snp153Common.bed.gz"
15     title="Genetics/Common SNPs (153)"
16     description="Data from UCSC Table Browser - common SNPs (snp153Common table) - updated Sep 30, 2020"
17 aloraine 96 url="H_sapiens_Dec_2013"
18 aloraine 100 direction_type="none"
19 aloraine 96 name_size="14"
20     label_field="id"
21 aloraine 9 background="FFFFFF"
22 aloraine 100 foreground="1B4C9B"
23 aloraine 96 show2tracks="false"
24     />
25 aloraine 9 <file name="H_sapiens_Dec_2013_all_est.psl.gz"
26 aloraine 96 title="UCSC Tracks/mRNA and EST/All human EST"
27 nfreese 131 description="Data from UCSC Table Browser - human EST alignments (all_est table) - updated Sep 30, 2020"
28 aloraine 96 url="H_sapiens_Dec_2013"
29 aloraine 9 direction_type="arrow"
30     max_depth="10"
31     name_size="16"
32     background="FFFFFF"
33     foreground="B71725"
34     label_field="id"
35 aloraine 96 show2tracks="true"
36     />
37     <file name="H_sapiens_Dec_2013_all_mrna.psl.gz"
38     title="UCSC Tracks/mRNA and EST/Human mRNAs"
39 nfreese 131 description="Data from UCSC Table Browser - human mRNA alignments (all_mrna table) - updated Sep 30, 2020"
40 aloraine 96 url="H_sapiens_Dec_2013"
41     direction_type="arrow"
42     max_depth="10"
43     name_size="16"
44     background="FFFFFF"
45     foreground="B71725"
46     label_field="id"
47     show2tracks="true"
48     />
49 nfreese 158 <file name="hg38-blacklist.v2.bed.gz"
50     title="ENCODE blacklist"
51     description="ENCODE-identified problematic regions of the genome (hg38-blacklist.v2.bed.gz)"
52     url="https://github.com/Boyle-Lab/Blacklist"
53     direction_type="none"
54     name_size="12"
55     background="FFFFFF"
56     foreground="000000"
57     label_field="name"
58     show2tracks="false"
59     />
60 aloraine 9 <file name="UCSCTracks/Assembly.bed.gz"
61 aloraine 96 title="UCSC Tracks/Mapping and Sequencing/Assembly"
62 aloraine 106 url="H_sapiens_Dec_2013/UCSCTracks/"
63 aloraine 9 />
64     <file name="UCSCTracks/Hg19_Diff.bed.gz"
65 aloraine 96 title="UCSC Tracks/Mapping and Sequencing/Hg19 Diff"
66 aloraine 106 url="H_sapiens_Dec_2013/UCSCTracks/"
67 aloraine 9 />
68     <file name="UCSCTracks/GENCODE.bed.gz"
69 aloraine 96 title="UCSC Tracks/Genes and Gene Predictions/GENCODE"
70 aloraine 106 url="H_sapiens_Dec_2013/UCSCTracks/"
71 aloraine 9 />
72 aloraine 99 <file name="H_sapiens_Dec_2013_ncbiRefSeq.bed.gz"
73     title="UCSC Tracks/Genes and Gene Predictions/RefSeq All"
74 nfreese 131 description="Data from UCSC Table Browser - RefSeq All (ncbiRefSeq table) - updated Sep 23, 2020"
75 aloraine 99 url="H_sapiens_Dec_2013"
76     foreground="B71725"
77     name_size="14"
78     direction_type="arrow"
79     label_field="title"
80     background="FFFFFF"
81     show2tracks="true"
82     />
83 aloraine 96 <file name="H_sapiens_Dec_2013_refGene.bed.gz"
84 aloraine 98 title="UCSC Tracks/Genes and Gene Predictions/RefGene (old)"
85 nfreese 131 description="Data from UCSC Genome Browser - RefGene track, updated Sep 30, 2020"
86 aloraine 98 foreground="000000"
87     name_size="14"
88     direction_type="arrow"
89     label_field="title"
90     background="FFFFFF"
91 aloraine 106 url="H_sapiens_Dec_2013/UCSCTracks/"
92 aloraine 96 />
93 aloraine 9 <file name="UCSCTracks/RetroGenes_V9.bed.gz"
94 aloraine 96 title="UCSC Tracks/Genes and Gene Predictions/RetroGenes V9"
95 aloraine 106 url="H_sapiens_Dec_2013/UCSCTracks/"
96 aloraine 9 />
97     <file name="UCSCTracks/CpG_Islands.bed.gz"
98 aloraine 96 title="UCSC Tracks/Regulation/CpG Islands"
99 aloraine 106 url="H_sapiens_Dec_2013/UCSCTracks/"
100 aloraine 9 />
101     <file name="UCSCTracks/RepeatMasker.bed.gz"
102 aloraine 96 title="UCSC Tracks/Repeats/RepeatMasker"
103 aloraine 106 url="H_sapiens_Dec_2013/UCSCTracks/"
104 aloraine 9 />
105     <file name="UCSCTracks/RepeatMasker_Viz.bed.gz"
106 aloraine 96 title="UCSC Tracks/Repeats/RepeatMasker Viz"
107 aloraine 106 url="H_sapiens_Dec_2013/UCSCTracks/"
108 aloraine 9 />
109 aloraine 96 <file name="cytoBand.cyt"
110     title="Cytobands"
111     load_hint="Whole Sequence"
112     />
113 aloraine 9 </files>

  ViewVC Help
Powered by ViewVC 1.1.26