/[genomes]/quickload/H_sapiens_Dec_2013/annots.xml
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Contents of /quickload/H_sapiens_Dec_2013/annots.xml

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Revision 158 - (show annotations)
Wed Sep 22 20:46:16 2021 UTC (14 months ago) by nfreese
File MIME type: text/xml
File size: 4131 byte(s)
IGBF-2696;Add hg38 ENCODE blacklist v2;Sep 22, 2021
1 <files>
2 <file name="H_sapiens_Dec_2013_ncbiRefSeqCurated.bed.gz"
3 title="RefSeq Curated"
4 description="Data from UCSC Table Browser - RefSeq Curated (ncbiRefSeqCurated) table - updated Sep 23, 2020"
5 url="H_sapiens_Dec_2013/"
6 foreground="000000"
7 name_size="14"
8 direction_type="arrow"
9 label_field="title"
10 background="FFFFFF"
11 load_hint="Whole Sequence"
12 show2tracks="true"
13 />
14 <file name="H_sapiens_Dec_2013_snp153Common.bed.gz"
15 title="Genetics/Common SNPs (153)"
16 description="Data from UCSC Table Browser - common SNPs (snp153Common table) - updated Sep 30, 2020"
17 url="H_sapiens_Dec_2013"
18 direction_type="none"
19 name_size="14"
20 label_field="id"
21 background="FFFFFF"
22 foreground="1B4C9B"
23 show2tracks="false"
24 />
25 <file name="H_sapiens_Dec_2013_all_est.psl.gz"
26 title="UCSC Tracks/mRNA and EST/All human EST"
27 description="Data from UCSC Table Browser - human EST alignments (all_est table) - updated Sep 30, 2020"
28 url="H_sapiens_Dec_2013"
29 direction_type="arrow"
30 max_depth="10"
31 name_size="16"
32 background="FFFFFF"
33 foreground="B71725"
34 label_field="id"
35 show2tracks="true"
36 />
37 <file name="H_sapiens_Dec_2013_all_mrna.psl.gz"
38 title="UCSC Tracks/mRNA and EST/Human mRNAs"
39 description="Data from UCSC Table Browser - human mRNA alignments (all_mrna table) - updated Sep 30, 2020"
40 url="H_sapiens_Dec_2013"
41 direction_type="arrow"
42 max_depth="10"
43 name_size="16"
44 background="FFFFFF"
45 foreground="B71725"
46 label_field="id"
47 show2tracks="true"
48 />
49 <file name="hg38-blacklist.v2.bed.gz"
50 title="ENCODE blacklist"
51 description="ENCODE-identified problematic regions of the genome (hg38-blacklist.v2.bed.gz)"
52 url="https://github.com/Boyle-Lab/Blacklist"
53 direction_type="none"
54 name_size="12"
55 background="FFFFFF"
56 foreground="000000"
57 label_field="name"
58 show2tracks="false"
59 />
60 <file name="UCSCTracks/Assembly.bed.gz"
61 title="UCSC Tracks/Mapping and Sequencing/Assembly"
62 url="H_sapiens_Dec_2013/UCSCTracks/"
63 />
64 <file name="UCSCTracks/Hg19_Diff.bed.gz"
65 title="UCSC Tracks/Mapping and Sequencing/Hg19 Diff"
66 url="H_sapiens_Dec_2013/UCSCTracks/"
67 />
68 <file name="UCSCTracks/GENCODE.bed.gz"
69 title="UCSC Tracks/Genes and Gene Predictions/GENCODE"
70 url="H_sapiens_Dec_2013/UCSCTracks/"
71 />
72 <file name="H_sapiens_Dec_2013_ncbiRefSeq.bed.gz"
73 title="UCSC Tracks/Genes and Gene Predictions/RefSeq All"
74 description="Data from UCSC Table Browser - RefSeq All (ncbiRefSeq table) - updated Sep 23, 2020"
75 url="H_sapiens_Dec_2013"
76 foreground="B71725"
77 name_size="14"
78 direction_type="arrow"
79 label_field="title"
80 background="FFFFFF"
81 show2tracks="true"
82 />
83 <file name="H_sapiens_Dec_2013_refGene.bed.gz"
84 title="UCSC Tracks/Genes and Gene Predictions/RefGene (old)"
85 description="Data from UCSC Genome Browser - RefGene track, updated Sep 30, 2020"
86 foreground="000000"
87 name_size="14"
88 direction_type="arrow"
89 label_field="title"
90 background="FFFFFF"
91 url="H_sapiens_Dec_2013/UCSCTracks/"
92 />
93 <file name="UCSCTracks/RetroGenes_V9.bed.gz"
94 title="UCSC Tracks/Genes and Gene Predictions/RetroGenes V9"
95 url="H_sapiens_Dec_2013/UCSCTracks/"
96 />
97 <file name="UCSCTracks/CpG_Islands.bed.gz"
98 title="UCSC Tracks/Regulation/CpG Islands"
99 url="H_sapiens_Dec_2013/UCSCTracks/"
100 />
101 <file name="UCSCTracks/RepeatMasker.bed.gz"
102 title="UCSC Tracks/Repeats/RepeatMasker"
103 url="H_sapiens_Dec_2013/UCSCTracks/"
104 />
105 <file name="UCSCTracks/RepeatMasker_Viz.bed.gz"
106 title="UCSC Tracks/Repeats/RepeatMasker Viz"
107 url="H_sapiens_Dec_2013/UCSCTracks/"
108 />
109 <file name="cytoBand.cyt"
110 title="Cytobands"
111 load_hint="Whole Sequence"
112 />
113 </files>

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