/[genomes]/quickload/H_sapiens_Feb_2009/HEADER.md
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Revision 10 - (hide annotations)
Wed Sep 26 22:23:41 2018 UTC (3 years, 10 months ago) by aloraine
File size: 1280 byte(s)
Add Feb 2009 GRCh37/hg19 human genome assembly
1 aloraine 10 <html>
2     <body>
3     <h1>Homo sapiens (Feb 2009) human being (GRCh37/hg19) genome assembly</h1>
4     <p>
5     The files listed below are formatted for visualization in the Integrated Genome
6     Browser, available from <a href="http://www.bioviz.org/igb">BioViz.org</a>.
7     </p>
8     <p>
9     Annotation (bed) and alignment (psl) files were downloaded from the UCSC Genome
10     Bioinformatics Table Browser. Each file is named for its corresponding table in the
11     UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
12     this directory for details.
13     </p>
14     <p>
15     Files with extension .gz were compressed and indexed using bgzip and
16     tabix tools from <a href="http://samtools.sourceforge.net">samtools.sourceforge.net</a>.
17     </p>
18     <p>
19     The file named H_sapiens_Feb_2009.2bit contains sequence data and was downloaded from the UCSC Genome
20     Bioinformatics <a href="http://hgdownload-test.sdsc.edu/downloads.html">downloads
21     page</a>. To convert a .2bit to fasta, use twoBitToFa. The file
22     <a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from
23     H_sapiens_Feb_2009.2bit sequence file using twoBitInfo.
24     </p>
25     <p>
26     Both twoBitInfo and twoBitToFa are
27     available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
28     </p>
29     </body>
30     </html>

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