/[genomes]/quickload/H_sapiens_Feb_2009/annots.xml
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Annotation of /quickload/H_sapiens_Feb_2009/annots.xml

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Revision 216 - (hide annotations)
Thu Mar 6 21:13:41 2025 UTC (5 days, 23 hours ago) by aloraine
File MIME type: text/xml
File size: 1701 byte(s)
IGBF-4030 Load sequence from UCSC bigzip urls for: cow 2011, cat 2011, human 2009, sheep 2010, rat 2012
1 aloraine 10 <files>
2 aloraine 216 <file name="https://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/hg19.2bit"
3     title="Homo sapiens (Feb 2009) human being (GRCh37/hg19)"
4     reference="true"
5     />
6 aloraine 10 <file name="cytoBand.cyt"
7     title="Cytobands"
8     load_hint="Whole Sequence"
9     />
10     <file name="H_sapiens_Feb_2009_refGene.bed.gz"
11     title="RefGene"
12     description="UCSC RefGene track (Nov 20, 2013)"
13     url="H_sapiens_Feb_2009/"
14     foreground="000000"
15     name_size="14"
16     direction_type="arrow"
17     label_field="title"
18     background="FFFFFF"
19     load_hint="Whole Sequence"
20     show2tracks="true"
21     />
22     <file name="H_sapiens_Feb_2009_all_mrna.psl.gz"
23     title="mRNA"
24     description="UCSC all mRNA track (Mar 27, 2013)"
25     url="H_sapiens_Feb_2009/"
26     max_depth="10"
27     background="FFFFFF"
28     foreground="B71725"
29     name_size="16"
30     label_field="id"
31     show2tracks="false"/>
32     <file name="H_sapiens_Feb_2009_all_est.psl.gz"
33     title="EST"
34     description="UCSC all EST track (Mar 27, 2013)"
35     url="H_sapiens_Feb_2009/"
36     direction_type="arrow"
37     max_depth="10"
38     name_size="16"
39     background="FFFFFF"
40     foreground="B71725"
41     label_field="id"
42 nfreese 159 show2tracks="false"/>
43     <file name="hg19-blacklist.v2.bed.gz"
44     title="ENCODE blacklist"
45     description="ENCODE-identified problematic regions of the genome (hg19-blacklist.v2.bed.gz)"
46     url="https://github.com/Boyle-Lab/Blacklist"
47     direction_type="none"
48     name_size="12"
49     background="FFFFFF"
50     foreground="000000"
51     label_field="name"
52 aloraine 10 show2tracks="false"/>
53     </files>

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