quickload/P_patens_Jan_2008/HEADER.md

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<h1>Physcomitrella patens (Jan 2008) genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
The gene model annotation file (P_patens_Jan_2008.bed.gz) was made
from version 1.6 GFF and gene information files downloaded from the <a
 href="https://www.cosmoss.org/physcome_project/wiki/Downloads">Cossmoss.org
Downloads page</a> in April, 2014.
</p>
<p>
The file named P_patens_Jan_2008.2bit contains sequence data. It
was made from fasta file also downloaded from <a
 href="http://www.cosmoss.org">CossMoss</a>.
To convert it back
to fasta, use twoBitToFa. 
</p>
The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from the 2bit sequence file using twoBitInfo.
</p>
<p>
You can get twoBitInfo, twoBitToFa, faToTwoBit, and related programs from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>. 
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1	<html>
2	<body>
3	<h1>Physcomitrella patens (Jan 2008) genome assembly</h1>
4	<p>
5	The files listed below are formatted for visualization in the Integrated Genome
6	Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
7	</p>
8	<p>
9	The gene model annotation file (P_patens_Jan_2008.bed.gz) was made
10	from version 1.6 GFF and gene information files downloaded from the <a
11	href="https://www.cosmoss.org/physcome_project/wiki/Downloads">Cossmoss.org
12	Downloads page</a> in April, 2014.
13	</p>
14	<p>
15	The file named P_patens_Jan_2008.2bit contains sequence data. It
16	was made from fasta file also downloaded from <a
17	href="http://www.cosmoss.org">CossMoss</a>.
18	To convert it back
19	to fasta, use twoBitToFa.
20	</p>
21	The file
22	<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from the 2bit sequence file using twoBitInfo.
23	</p>
24	<p>
25	You can get twoBitInfo, twoBitToFa, faToTwoBit, and related programs from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
26	</p>
27	</body>
28	</html>